Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq594 95.1 2e-14 >seq594 Length=218677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTG 102180 |||| ||||| || |||||||| |||||||| | | | | | ||| | || | | Sbjct 188369 TCAAGAAGAAGGCTGATTGGGCACTGAAGTGGATCGGTGCCGATGCGCCCTACTCCGTTA 188310 Query 102181 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 102240 || || |||| || || || || || ||||||||||| || ||||| ||| | Sbjct 188309 ---GAGTCATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCA 188253 Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300 | | |||||||||||| |||| |||||||| || | |||||||||||||||||| | Sbjct 188252 TCTTCTGGCTCAAGAAGAGAGGCCTCATGCCCGGCGTAACCTTCTCCAACGAGCTTATTT 188193 Query 102301 CTCGTGACGAGGG 102313 || | ||||| || Sbjct 188192 CTAGAGACGAAGG 188180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732623307200