Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq355 197 3e-45 seq654 183 7e-41 seq532 122 2e-22 seq534 87.8 4e-12 >seq355 Length=2689 Score = 197 bits (218), Expect = 3e-45 Identities = 166/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| || || ||||| || | |||||| | ||||||||| ||||| Sbjct 164 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTG 223 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||||||||| || |||||||| |||||||||||||||||||| ||||| Sbjct 224 CTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTT 283 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || |||||||| ||| |||||||| || | |||||| || || Sbjct 284 GGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGT 343 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 344 TAAAGTCTTGACGAAGATCTGCAT 367 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || |||||||| || || ||||| || | |||||| | ||||||||| Sbjct 387 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 446 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 447 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 506 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| || || |||||||| ||| |||||||| || | |||||| Sbjct 507 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 566 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || ||||| | ||||| Sbjct 567 CCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || |||||||| || || ||||| || | |||||| | ||||||||| Sbjct 615 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 674 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 675 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 734 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| || || |||||||| ||| |||||||| || | |||||| Sbjct 735 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 794 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || ||||| | ||||| Sbjct 795 CCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| |||||||||||||| ||||| || | |||||||| ||||| || Sbjct 1935 ACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCA 1994 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || |||||||| || || ||||| ||||| || Sbjct 1995 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGG 2054 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| |||||||| ||| || || || || || | || || Sbjct 2055 ATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTG 2114 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 2115 CCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 129 bits (142), Expect = 1e-24 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||||||||| ||||| || ||||| |||| || || | ||| || ||| Sbjct 1598 ACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCG 1657 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||||||||| || |||||||| || || ||||||||||| ||| Sbjct 1658 AGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCCTGA 1717 Query 195052 A 195052 | Sbjct 1718 A 1718 Score = 123 bits (136), Expect = 6e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || || || || |||||||| || || |||||||| | |||||||| Sbjct 2153 GAGTCGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTTCG 2212 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || |||||||||||||| || |||||||||||||| || |||||||| ||||| ||||| Sbjct 2213 GCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTC 2272 Query 195042 TTTGTC 195047 ||||| Sbjct 2273 CTTGTC 2278 >seq654 Length=87504 Score = 183 bits (202), Expect = 7e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| || || ||||| || | |||||| | ||||||||| ||||| Sbjct 81572 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTG 81631 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||||||||| || |||||||| |||||||||||||||||||| ||||| Sbjct 81632 CTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTT 81691 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||||||||| ||| || || || ||||| | || || || || Sbjct 81692 GGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTACCGGT 81751 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 81752 AAGGGTTTTGACGAAGATCTGCAT 81775 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| |||||||||||||| ||||| || | |||||||| ||||| || Sbjct 82887 ACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCA 82946 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || |||||||| || || ||||| ||||| || Sbjct 82947 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGG 83006 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| |||||||| ||| || || ||||| || | || || Sbjct 83007 ATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTG 83066 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 83067 CCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 129 bits (142), Expect = 1e-24 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||||||||| ||||| || ||||| |||| || || | ||| || ||| Sbjct 82550 ACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCG 82609 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||||||||| || |||||||| || || ||||||||||| ||| Sbjct 82610 AGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCCTGA 82669 Query 195052 A 195052 | Sbjct 82670 A 82670 Score = 129 bits (142), Expect = 1e-24 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || || || || ||||||||||| || |||||||| | |||||||| Sbjct 83105 GAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCG 83164 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || |||||||||||||| || |||||||||||||| || |||||||| ||||| ||||| Sbjct 83165 GCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTC 83224 Query 195042 TTTGTC 195047 ||||| Sbjct 83225 CTTGTC 83230 >seq532 Length=2515153 Score = 122 bits (134), Expect = 2e-22 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||||||||| || || || ||||| |||| |||||||| ||||| ||||||||| Sbjct 2299458 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGC 2299517 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||| |||||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 2299518 TTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTC 2299567 >seq534 Length=1792778 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || | ||||||| ||||| || Sbjct 1550932 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCGACCATCCTCA 1550873 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCT 195027 ||||| ||||| |||||||| | |||||| || ||| Sbjct 1550872 AGCTGTTTACCAGCGAAGATTAATCGTTGCTGATCT 1550837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109463688806420