Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq355 140 2e-28 seq654 136 3e-27 >seq355 Length=2689 Score = 140 bits (154), Expect = 2e-28 Identities = 148/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| ||||| ||||| |||| |||| || ||||| || |||||||| Sbjct 1953 TCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAG 2012 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| |||| | || |||||||| ||||| |||||| || Sbjct 2013 ATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 2070 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| ||||| || |||| || |||||||| || ||||||||||| | Sbjct 2071 TCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGA 2130 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 2131 CAAAGATCTGCAT 2143 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||| ||||| ||||||||||| | || |||| || Sbjct 159 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 218 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || ||||| ||||||||| | || | || || ||||| Sbjct 219 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 278 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | || | || ||| ||||| || | || || || || Sbjct 279 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 338 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || |||||||||||| Sbjct 339 CCGGTTAAAGTCTTGACGAAGATCTGCATA 368 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||||||||| | || |||| || ||||| || ||||| || Sbjct 405 TCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAG 464 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| | || | || || ||||| || || || ||| Sbjct 465 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTG 524 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| ||||| || | || || || || || || | |||||| || Sbjct 525 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 584 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 585 AAGATCTGCATA 596 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||||||||| | || |||| || ||||| || ||||| || Sbjct 633 TCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAG 692 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| | || | || || ||||| || || || ||| Sbjct 693 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTG 752 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| ||||| || | || || || || || || | |||||| || Sbjct 753 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 812 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 813 AAGATCTGCATA 824 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | | | || |||| || ||||| || ||||| || Sbjct 861 TCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAG 920 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| | || | || |||||||| ||||| || ||| Sbjct 921 ATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTG 980 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| ||||| || | || || || || || || | |||||| || Sbjct 981 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 1040 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1041 AAGATCTGCATA 1052 >seq654 Length=87504 Score = 136 bits (150), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| ||||| ||||| |||| |||| || ||||| || |||||||| Sbjct 82905 TCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAG 82964 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| |||| | || |||||||| ||||| |||||| || Sbjct 82965 ATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 83022 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| ||||| || || | || |||||||| || ||||||||||| | Sbjct 83023 TCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGA 83082 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 83083 CAAAGATCTGCAT 83095 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||| ||||| ||||||||||| | || |||| || Sbjct 81567 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 81626 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || ||||| ||||||||| | || | || || ||||| Sbjct 81627 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 81686 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | | || | || |||||||| |||| ||| || ||||| Sbjct 81687 ATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTA 81746 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || || || |||||||||||| Sbjct 81747 CCGGTAAGGGTTTTGACGAAGATCTGCATA 81776 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | | | || |||| || ||||| || ||||| || Sbjct 81813 TCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAG 81872 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| | || | || |||||||| ||||| || ||| Sbjct 81873 ATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTG 81932 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| ||||| || | || || || || || || | |||||| || Sbjct 81933 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 81992 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 81993 AAGATCTGCATA 82004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628614845280