Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq539 122 7e-22 >seq539 Length=1154401 Score = 122 bits (134), Expect = 7e-22 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 550314 AATTTTCACCAGAACAAATTTCATCTATGGT--TTTAATGAAAATGAAACAAACAGCCAG 550371 |||| | |||||||||||||| | ||||| || || || ||||| |||| ||| Sbjct 1069371 AATTCGCGCCAGAACAAATTTCTGCAATGGTCCTTCAA--AAGATGAAGCAAATCGCCGA 1069428 Query 550372 TGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGA 550431 | | | |||||||| || | ||||| | |||||||| || ||||| || || Sbjct 1069429 GGAGTATCTTGGTCAAACGGTCAAAAGGGCAGTCGTTACTGTACCGGCGTATTTCAACGA 1069488 Query 550432 CTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTA 550490 || || ||||||||||||||||| || ||| |||||||| || | || |||| | Sbjct 1069489 TGAGCAGCGCCAAGCTACTAAAGATGCAGGCACG-ATTGCTGGTATTGAAGTGATTCGGA 1069547 Query 550491 TTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||||| || || ||||| ||||||||||| |||||||| || ||| Sbjct 1069548 TTATCAACGAGCCAACTGCAGCTGCACTTGCGTATGGACTCGACAAA 1069594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029229365517400