Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq654 104 2e-17 seq355 104 2e-17 >seq654 Length=87504 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| ||||| ||||| ||| |||| | || || | |||||| |||||||| Sbjct 82904 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 82963 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||||||| || || | || | || |||||||| ||||| ||| ||| Sbjct 82964 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 83023 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||| ||||| | || || ||||| || || | ||| || || Sbjct 83024 CTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 83083 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 83084 AAAGATCTGCAT 83095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| ||||||||| || ||||||||||| ||| |||| |||| || | ||| Sbjct 83120 ATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTG 83179 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 ||| || || || || |||||||| || || | ||||| || |||||||| |||| Sbjct 83180 CTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC-CTAA 83234 >seq355 Length=2689 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| ||||| ||||| ||| |||| | || || | |||||| |||||||| Sbjct 1952 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2011 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||||||| || || | || | || |||||||| ||||| ||| ||| Sbjct 2012 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 2071 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||| ||||| | || || ||||| || || | ||| || || Sbjct 2072 CTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 2131 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 2132 AAAGATCTGCAT 2143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| |||||| || || ||||||||||| ||| |||| |||| || | ||| Sbjct 2168 ATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTG 2227 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 ||| || || || || |||||||| || || | ||||| || |||||||| |||| Sbjct 2228 CTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC-CTAA 2282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931750226980