Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq522 107 4e-18 seq685 89.7 1e-12 >seq522 Length=2018 Score = 107 bits (118), Expect = 4e-18 Identities = 77/87 (89%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || ||||||||||||||| ||||||| ||||||||||||||||||||||||||| || Sbjct 1681 ATCGCGGAGTAGAGCAGT--GGTAGCTCGCAAGGCTCATAACCTTGAGGTCGTGT---GT 1735 Query 324477 TCGAATCCCACCTCCGCATCCAATTTT 324503 |||| || |||||||||| |||||||| Sbjct 1736 TCGATTCACACCTCCGCAACCAATTTT 1762 >seq685 Length=65961 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 |||| | |||||||||||| ||||||||||| ||||| | |||| |||||||||||||| Sbjct 65434 GGGGGTTTAGCTCAGTTGGTAGAGCGTCTGCTTTGCAAGCAGAATGTCAACGGTTCGAAT 65493 Query 324575 CCGTTTAGCTCCAC 324588 ||||| | |||||| Sbjct 65494 CCGTTAACCTCCAC 65507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147571873587480