Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq594 111 3e-19 >seq594 Length=218677 Score = 111 bits (122), Expect = 3e-19 Identities = 196/277 (71%), Gaps = 13/277 (5%) Strand=Plus/Plus Query 48167 ATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATT 48226 || ||| ||||||||||| | || ||||||| || |||| ||||||||||| || Sbjct 188195 ATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTTCTTGAGCCAGAAGATG 188254 Query 48227 GCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCT 48286 || || || ||||| |||||||||||||| || || || ||||| ||| ||| |||| Sbjct 188255 GCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAAAGCGATGA--CTCTAA 188312 Query 48287 CCGAAAGAAGCGTTC-TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT 48345 | | || || | | | | | |||||| || ||||| || |||||||||||||| Sbjct 188313 CGG--AGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATCAGCCTTCTTCTTGAT 188370 Query 48346 GCATGGCATCGTCTCTATGGCCCGGAAGAG---CTTCTTGCACTCACCTG-CGTCCGCAA 48401 ||||||||||| || || |||||| | |||| | || | || ||| | | Sbjct 188371 AGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTT-CTCTTTCGTGTCGT--GGAC 188427 Query 48402 CATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTG 48438 || | | || |||||| ||||||||||| ||||| Sbjct 188428 CAGA-TTCTCGATCAGCTTGGCGTACATCTCCGAGTG 188463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518128358400