Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq539 113 3e-19 seq654 109 4e-18 seq355 104 2e-16 seq530 96.9 2e-14 >seq539 Length=1154401 Score = 113 bits (124), Expect = 3e-19 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 474651 AATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGC 474709 |||| | || |||||||||||| ||||||| | || ||||| |||| ||| ||| Sbjct 1069371 AATTCGCGCCAGAACAAATTTCTGCAATGGTCCTTCAAAAGATGAAGCAAATCGCCGAGG 1069430 Query 474710 TCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769 |||||||| ||| || | ||||| ||||||| || || ||||| || ||| Sbjct 1069431 AG-TATCTTGGTCAAACGGTCAAAAGGGCAGTCGTTACTGTACCGGCGTATTTCAACGAT 1069489 Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829 || || ||||| ||||||||||| || | ||||| ||| || | || | || ||| Sbjct 1069490 GAGCAGCGCCAAGCTACTAAAGATGCAGGCACGATTGCTGGTATTGAAGTGATTCGGATT 1069549 Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || || || ||||| ||||| |||||||| ||||| || || || Sbjct 1069550 ATCAACGAGCCAACTGCAGCTGCACTTGCGTATGGACTCGACAA 1069593 >seq654 Length=87504 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || ||||| || ||| ||||| || || || |||| |||||| Sbjct 82875 CGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTT 82934 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||| ||||| || ||||| || || || || || || || || || ||| Sbjct 82935 CGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCT 82994 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||||| || || || |||| | | | ||||| Sbjct 82995 TCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA-CCTCAAG 83053 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||||||||| || || || || Sbjct 83054 AGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTG 83092 >seq355 Length=2689 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || ||||| || ||| ||||| || || || |||| |||||| Sbjct 1923 CGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTT 1982 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||| ||||| || ||||| || || || || || || || || || ||| Sbjct 1983 CGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCT 2042 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||||| || || || |||| | | | || || Sbjct 2043 TCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA-CCTCGAG 2101 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||||||||| || || || || Sbjct 2102 AGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTG 2140 >seq530 Length=3167015 Score = 96.9 bits (106), Expect = 2e-14 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 817098 TAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAA 817157 || |||||| |||||||||||| || ||||||||| |||| |||||| |||| |||| Sbjct 2359143 TAAATTTTTTTAGTCCAAATATTGCTAAAGAAATGCATGTTGGCCACTTGCGATCAACAA 2359202 Query 817158 TAATTGGTGAATCTCTTTGTAGAATATAT--GAATTTTGTGGATGTGAAGTACAAAGAAT 817215 | |||||||| ||| | | | ||| | | ||| || ||| | ||||| | ||||| Sbjct 2359203 TTATTGGTGATTCT-ATCGCA-AATCTCTTCGAAGCTTATGGCTACGAAGTTCTCAGAAT 2359260 Query 817216 AAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 ||| || | || |||||||| ||||| || || ||| | || ||| Sbjct 2359261 AAACCACGTCGGCGATTGGGGCACACAGTTCGGCATGCTCATCGCA 2359306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268125152486480