Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq530 84.2 3e-11 >seq530 Length=3167015 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| | ||||| || || || || || || || || ||||| || Sbjct 1283566 ACTCCAATAGGACCGGCACCAGGTCCACCGCCACCGTGAGGGATGGCAAAAGTCTTGTGC 1283625 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| | ||||| |||||||| | | ||| | || || | ||| || Sbjct 1283626 AGATTCAAATGGGAGACATCGGCACCATATTTTCCTGGCCGAGAGAGTCCCATCTGAGCG 1283685 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGA 138351 |||||||| || ||||||||||| || ||||| || |||||||||| Sbjct 1283686 TTTAGATTCGCTCCATCGAGATAAACTTGACCGCCGACATCATGAACGA 1283734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989280775200