Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq654 93.3 6e-14 seq355 93.3 6e-14 >seq654 Length=87504 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| || || || || | || ||||||| || Sbjct 82231 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 82172 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| || || || ||||| || || ||||| || Sbjct 82171 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 82112 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | || || |||||||| |||||| | || || ||||| || || Sbjct 82111 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 82052 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| ||||||||||| Sbjct 82051 ATCCAGAAAGAGTCGACGCTTCAT 82028 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| || || | || || || | ||| Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| |||||||| |||||| | ||| | || || || || Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGT 81567 >seq355 Length=2689 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || || || || || || || | ||||| |||| || Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 535 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 476 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| |||||||| |||||| | ||| | || || || || Sbjct 475 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 416 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| ||||||||||| Sbjct 415 ATCCAGAAAGAGTCGACGCTTCAT 392 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || || || || || || || | ||||| |||| || Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 763 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 704 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| |||||||| |||||| | ||| | || || || || Sbjct 703 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 644 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| ||||||||||| Sbjct 643 ATCCAGAAAGAGTCGACGCTTCAT 620 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| || || || || | || ||||||| || Sbjct 1279 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 1220 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| || || || ||||| || || ||||| || Sbjct 1219 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 1160 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | || || |||||||| |||||| | || || ||||| || || Sbjct 1159 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 1100 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| ||||||||||| Sbjct 1099 ATCCAGAAAGAGTCGACGCTTCAT 1076 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || || || || || || || | ||||| |||| || Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| |||||||| |||||| | ||| | || || || || Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 187 ATCCAGAAAGAGTCCACCCTTCACTTGGT 159 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || || || || || || || | ||||| |||| || Sbjct 1051 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 992 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||| || ||||| || ||||| || || ||||| || Sbjct 991 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 932 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| |||||||| |||||| | || || || || || || Sbjct 931 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 872 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| ||||||||||| Sbjct 871 ATCCAGAAAGAGTCGACGCTTCAT 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731860473016000