Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq530 141 1e-27 seq594 114 2e-19 seq545 104 3e-16 seq538 104 3e-16 seq1092 102 1e-15 seq549 98.7 1e-14 seq563 95.1 1e-13 seq630 86.0 8e-11 seq572 86.0 8e-11 >seq530 Length=3167015 Score = 141 bits (156), Expect = 1e-27 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | || ||||||||| ||||||||||||||||| | | |||||| Sbjct 1746426 GCCAGTTCACCGGGAAGGAGCAGGCGCACTGCGGTCTGGATCTCGCGGGAGGAGATCGTC 1746485 Query 1254408 TTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1254466 |||||| || || ||||| || || ||| | |||| ||||||| ||||| Sbjct 1746486 GACTTCTTGTT-GATCGCAGCCAGGCGTGAAGCTTCGTTCGCGATCCGGTCGAAGATGTC 1746544 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||| |||||||||||||||| |||||||| || || |||||| ||| || || || Sbjct 1746545 GTTCACAAACGAGTTCATGATCGACATCGCATTCGATGACATGCCCGTGTCCGGATGAAC 1746604 Query 1254527 CTGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||||||||||||| Sbjct 1746605 TTGCTTCAGCACCTTGTAGATG 1746626 >seq594 Length=218677 Score = 114 bits (126), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| | | || | |||||| |||| | ||||||||||||||| | ||| Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||||| || ||| ||||| |||||||| ||||||||||| || Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| ||| || || || | | | || ||||||||||| ||||| Sbjct 188299 AGCGATGA----CTC--TAACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCA 188352 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAG 869406 || ||||| ||| | | | ||||| ||| ||||| ||| ||||| Sbjct 188353 ATCAGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAG 188400 Score = 89.7 bits (98), Expect = 6e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 869656 CTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGC 869715 |||||||||||| || | | | | |||| | || | || |||||| || || | Sbjct 188525 CTGGAAGCCGTAGAAAGAGCGCGCTTCTGGAATCTGAATTTCGGACATGAATCGATCGAC 188584 Query 869716 CAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAA 869775 || |||||| ||||| |||||||| || || || ||||| || |||||||| || || Sbjct 188585 GAGATTCTCGTTAACGATTCCGTCGCTTGCAGCAAAGAAAGCGAGCACGTGCTTAATGAA 188644 Query 869776 GTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTC 869835 | |||| || | ||||| | ||||| | | ||||| | ||| || || || Sbjct 188645 GAACTGCTCCTCCTTCTTGAGCTTCTTCCAGTCGTCCATGTCGCGTCCGAGATCGACTTC 188704 Query 869836 CTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACAT 869874 |||| ||||||| || ||| | || ||||||||||| Sbjct 188705 TTCGGTCGTCCAGAAAGACGCCACTGCTTTTTTGTACAT 188743 >seq545 Length=868584 Score = 104 bits (114), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGA--TCTCGCGC-GTGC 1254399 || |||| ||||| ||| | | || || || ||||||||||||| ||||| | | Sbjct 35312 GCTTGGCGAGTTCTCCGGGGAGGAGGAGTCGTACGGCGGTCTGGACTTCTCGGGAAGAAA 35371 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| || |||||| | | || || ||| ||| ||| || |||| || |||| Sbjct 35372 TGGTCGACTT---CTTGTTGTACTTGGCGAGTCGGGAGGCTTCGTTGGCGATTCGCTCGA 35428 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||| || ||||||||||||| ||||| | |||| ||| || || ||||| Sbjct 35429 AGATGTCGGACACGAACGAGTTCATGATGGACATGGCCTTGGAGGAAATACCGGTGTCGG 35488 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| |||||||| || |||||||||||| Sbjct 35489 GGTGAACCTGCTTCAGGACCTTGTAGATG 35517 >seq538 Length=1333408 Score = 104 bits (114), Expect = 3e-16 Identities = 127/172 (74%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 1254378 GCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCG 1254437 || ||||||||||| || | ||| ||| |||||| | |||| ||| | Sbjct 241404 GCAGTCTGGATCTCTCGGGAAGAGATGGTGGACTTCTTGTTGATCTTGGCCAATCGGGAG 241463 Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 |||||| || | ||||| | |||||||||||||| |||||||||| ||||| | | Sbjct 241464 GCCTCGCAACCAACTCGGTCAAAGATGTCGTTGACAAAGGAGTTCATGATAGACATGGCC 241523 Query 1254498 TTGT-TGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| ||||||| ||| ||||||||| |||||||| || |||||||||||| Sbjct 241524 TTGGGTGGAGATTCCCTGGTCGGGGTGGACCTGCTTCAGGACCTTGTAGATG 241575 >seq1092 Length=15349 Score = 102 bits (112), Expect = 1e-15 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1254453 CGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCC 1254512 ||||| | ||||||||||| || |||||||||| ||||| | |||| ||||||| ||| Sbjct 7713 CGGTCAAAGATGTCGTTGACGAAGGAGTTCATGATAGACATGGCCTTGGTGGAGATTCCC 7654 Query 1254513 ACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||| |||||||| || |||||||||||| Sbjct 7653 TGGTCGGGGTGGACCTGCTTCAGGACCTTGTAGATG 7618 >seq549 Length=633838 Score = 98.7 bits (108), Expect = 1e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1254377 GGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC 1254436 ||| ||||| ||||| || | | ||| ||| |||||| | || || ||| Sbjct 154574 GGCAGTCTGAATCTCTCGGGAGGAGATTGTGGCCTTCTTGTTGATCTTGGCAAGGCGGGA 154515 Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 || ||| ||||| ||||||| |||||| || ||||||||||||| ||||| | Sbjct 154514 AGCTTCGCAGCCGACTCGGTCGAAGATGTCGCACACGAACGAGTTCATGATGGACATGGC 154455 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| |||||| ||| ||||||||| || |||||||| |||||||||||| Sbjct 154454 CTTGGAGGAGATTCCCTGGTCGGGGTGGACTTGCTTGAGGACCTTGTAGATG 154403 >seq563 Length=403863 Score = 95.1 bits (104), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 1254377 GGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC 1254436 ||| ||||| ||||| || | | ||| ||| |||||| | || || ||| Sbjct 313602 GGCAGTCTGAATCTCTCGGGAGGAGATAGTGGCCTTCTTGTTGATTTTGGCAAGGCGGGA 313661 Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 || ||| ||||| ||||||| |||||| || ||||||||||||| ||||| | Sbjct 313662 AGCTTCGCAGCCGACTCGGTCGAAGATGTCGCACACGAACGAGTTCATGATGGACATAGC 313721 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||| ||| ||||||||| || |||||||| |||||||||||| Sbjct 313722 TTTGGAGGAGATTCCCTGGTCGGGGTGGACTTGCTTGAGGACCTTGTAGATG 313773 >seq630 Length=113812 Score = 86.0 bits (94), Expect = 8e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||| ||| | | | || || ||||||||||||| || || | ||| || Sbjct 8194 GCAAGTTCTCCGGGGAGAAGGAGTCGGACGGCGGTCTGGACTTCTCGGGAAGAGATGGTA 8135 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | | || || || || ||| || |||| || |||| ||||| Sbjct 8134 GACTTCTTGTTGTATTTGGCGAGTCGAGAAGCTTCGTTGGCGATTCGCTCGAAAATGTCA 8075 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || ||||||||||||| ||||| | || ||||||||| |||||||| ||| Sbjct 8074 GACACGAACGAGTTCATGATTGACATGGCTTTCGAGGAGATGCCAGTATCGGGGTGGACC 8015 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||| |||||||||||| | |||||| || Sbjct 8014 TGCTTGAGAACCTTGTAGATGTAGATCGAGTAAGA 7980 Score = 86.0 bits (94), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || ||| || |||| || |||| ||||| || ||||||||||||| ||||| | Sbjct 16572 GCTTCGTTGGCGATTCGCTCGAAAATGTCAGACACGAACGAGTTCATGATTGACATGGCT 16513 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557 || ||||||||| |||||||| ||||||||||| |||||||||||| | |||| Sbjct 16512 TTCGAGGAGATGCCAGTATCGGGGTGGACCTGCTTGAGAACCTTGTAGATGTAGATCGAG 16453 Query 1254558 TACGA 1254562 || || Sbjct 16452 TAAGA 16448 >seq572 Length=310451 Score = 86.0 bits (94), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | || || || ||||||||||||| || || | || Sbjct 22474 GCTTGGCAAGTTCTCCGGGTAGGAGGAGTCGGACGGCGGTCTGGACTTCTCGGGAAGAGA 22533 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| | | || || || || || || |||| || || | | Sbjct 22534 TAGTCGACTTCTTGTTGTACTTGGCAAGTCGAGAAGCTTCATTGGCGATTCGCTCAAAAA 22593 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || ||||||||||||| |||||| | || ||||||||| || |||| Sbjct 22594 TGTCAGACACGAACGAGTTCATGATCGACATGGCTTTTGAGGAGATGCCAGTATCAGGGT 22653 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| |||||||||||| | |||||| || Sbjct 22654 GGACCTGCTTGAGAACCTTGTAGATGTAAATCGAGTAAGA 22693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107035798499420