Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq654 122 8e-23 seq355 118 1e-21 >seq654 Length=87504 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||||||||| || || ||||| || || || || Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||||||||| || || || || || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| || ||| | | | | || || || ||| Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || |||||||| | ||| | || || || Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGG 81549 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || || || || || || | Sbjct 83095 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCT 83036 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || || || Sbjct 83035 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 82976 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| |||||| ||| | || || || ||| Sbjct 82975 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 82916 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || || || | || | ||| | || |||||| Sbjct 82915 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGGC 82868 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||| || || || ||||| ||||| |||||| | Sbjct 82003 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 81944 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 81943 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 81884 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| || ||| | | | |||| || || ||| Sbjct 81883 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 81824 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || ||| | || | ||| | || || || Sbjct 81823 ATCCAGAAAGAGTCGACGCTTCACCTCGTCCTCCGACTTCGTGGTGG 81777 >seq355 Length=2689 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || ||||| || || || | Sbjct 2143 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCT 2084 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || || || Sbjct 2083 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 2024 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| |||||| ||| | || || || ||| Sbjct 2023 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 1964 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || || || | || | ||| | || |||||| Sbjct 1963 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGGC 1916 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||| || || || ||||| ||||| |||||| | Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||||||||| || || || || || Sbjct 307 GACACTATCGACAACGTGAAGGCCAAA-ATCCAAGACAAAGAAGGCATTCCACCAGACCA 249 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| || ||| | | | | || || || || Sbjct 248 GCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAA 189 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| | ||| | || || || Sbjct 188 CATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGG 141 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||| || || || ||||| ||||| |||||| | Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||||||||| || || || || || Sbjct 535 GACACTATCGACAACGTGAAGGCCAAA-ATCCAAGACAAAGAAGGCATTCCACCAGACCA 477 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| || ||| | | | | || || || || Sbjct 476 GCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAA 417 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| || || || ||||| || || Sbjct 416 CATCCAGAAAGAGTCGACGCTTCA 393 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||| || || || ||||| ||||| |||||| | Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||||||||| || || || || || Sbjct 763 GACACTATCGACAACGTGAAGGCCAAA-ATCCAAGACAAAGAAGGCATTCCACCAGACCA 705 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| || ||| | | | | || || || || Sbjct 704 GCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAA 645 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| || || || ||||| || || Sbjct 644 CATCCAGAAAGAGTCGACGCTTCA 621 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||||| || || || ||||| ||||| |||||| | Sbjct 1051 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 992 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 991 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 932 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| || ||| | | | |||| || || ||| Sbjct 931 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 872 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || || || ||||| || || Sbjct 871 ATCCAGAAAGAGTCGACGCTTCA 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890514112800