Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq355 89.7 4e-13 seq539 87.8 1e-12 seq654 86.0 5e-12 >seq355 Length=2689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | |||||||||||||| || |||| ||| || Sbjct 2143 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCT 2084 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 2083 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 2024 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | ||| || || ||||| ||||||| | |||| | | || |||||| Sbjct 2023 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 1964 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 1963 ATTCAAAAAGAGTCTAC 1947 >seq539 Length=1154401 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 ||||| |||||| ||| ||||||||| ||||| || ||||| || || || | ||| Sbjct 678934 AGCGCGCGGGCGATATCGACCATGTTGACAATGACCGTTTTGATACCATTTCCTTGGCCT 678875 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || || |||||| |||| ||||| |||||||||||||||| ||| || | ||| Sbjct 678874 TCAACTTTGGCGACTATGCCGGGCATCTTGTAGCGGTAGAACGGGTCATTAACCTCTCGG 678815 Query 34624 TTAACGTT 34631 ||||| || Sbjct 678814 TTAACATT 678807 >seq654 Length=87504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | |||||||||||||| || | || ||| || Sbjct 83095 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCT 83036 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 83035 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 82976 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | ||| || || ||||| ||||||| | |||| | | || |||||| Sbjct 82975 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 82916 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 82915 ATTCAAAAAGAGTCTAC 82899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412835260301180