Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq530 194 3e-43 seq563 150 3e-30 seq545 150 3e-30 seq538 145 1e-28 seq549 141 1e-27 seq1092 138 2e-26 seq630 136 6e-26 seq572 132 8e-25 seq594 100 5e-15 >seq530 Length=3167015 Score = 194 bits (214), Expect = 3e-43 Identities = 192/243 (79%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || || || |||||| | |||||||| ||| | | Sbjct 1746382 TGTATTTGGTGACGGCCTTGGTGCCTTCAGAAACTGCGTGCTTTGCCAGTTCACCGGGAA 1746441 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||| ||||||||||||||||||| | |||||| |||||| | | Sbjct 1746442 GGAGCAGGCGCACTGCGGTCTGGATCTCGCGGGAGGAGATCGTCGACTTCTTGTT-GATC 1746500 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||||||| || ||| | |||| ||||||| |||||||| |||||||||||| Sbjct 1746501 GCAGCCAGGCGTGAAGCTTCGTTCGCGATCCGGTCGAAGATGTCGTTCACAAACGAGTTC 1746560 Query 1485649 ATGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||||||||| ||| | | || |||||| ||| || || || ||||| |||||||| Sbjct 1746561 ATGATCGACATCGCATTCGAT-GACATGCCCGTGTCCGGATGAACTTGCTTCAGCACCTT 1746619 Query 1485708 GTA 1485710 ||| Sbjct 1746620 GTA 1746622 >seq563 Length=403863 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||| |||||| ||| || || || | | Sbjct 313529 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGATGGCGTGTTTGGAGAGCTCACCAGGGA 313588 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||| ||||| ||||| |||| | ||| ||| |||||| | Sbjct 313589 AGAGGAGTCGGCAGGCAGTCTGAATCTCTCGGGAGGAGATAGTGGCCTTCTTGTTGATTT 313648 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || |||||| || ||| ||||| ||||||| |||||| || |||||||||| Sbjct 313649 TGGCAAGGCGGGAAGCTTCGCAGCCGACTCGGTCGAAGATGTCGCACACGAACGAGTTCA 313708 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | |||| |||||| ||| ||||||||| || |||||||| ||||||| Sbjct 313709 TGATGGACATAGCTTTGGAGGAGATTCCCTGGTCGGGGTGGACTTGCTTGAGGACCTTGT 313768 Query 1485710 A 1485710 | Sbjct 313769 A 313769 >seq545 Length=868584 Score = 150 bits (166), Expect = 3e-30 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||| ||||| ||| | | Sbjct 35273 TGTACTTGGTGACGGCCTTGGTTCCTTCAGAGACGGCGTGCTTGGCGAGTTCTCCGGGGA 35332 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||||||||||| || |||| || || |||||| || | Sbjct 35333 GGAGGAGTCGTACGGCGGTCTGGACTTCTCGGGAAGAAATGGTCGACTTCTTGTT-GTAC 35391 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || ||| ||| ||| || |||| || |||| |||||| || ||||||||| Sbjct 35392 TTGGCGAGTCGGGAGGCTTCGTTGGCGATTCGCTCGAAGATGTCGGACACGAACGAGTTC 35451 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | ||| ||| || || ||||||||| |||||||| || |||||| Sbjct 35452 ATGATGGACATGGCCTTGGAGGAAATACCGGTGTCGGGGTGAACCTGCTTCAGGACCTTG 35511 Query 1485709 TA 1485710 || Sbjct 35512 TA 35513 >seq538 Length=1333408 Score = 145 bits (160), Expect = 1e-28 Identities = 180/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || ||||||||| ||| |||||||| ||||| |||||||||||| ||| || || || Sbjct 241327 CGGTGTACTTGGAGACAGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGAAAGCTCACCAG 241386 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | || || || || ||||||||||| |||| ||| ||| |||||| Sbjct 241387 GGAAGAGGAGTCGGCAAGCAGTCTGGATCTCTCGGGAAGAGATGGTGGACTTCTTGTTGA 241446 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||| ||| ||||||| || | ||||| | |||||||||||||| |||| Sbjct 241447 TCTTGGCCAATCGGGAGGCCTCGCAACCAACTCGGTCAAAGATGTCGTTGACAAAGGAGT 241506 Query 1485647 TCATGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 ||||||| ||||| | || | ||||||| ||| ||||||||| |||||||| || ||| Sbjct 241507 TCATGATAGACATGGCCTTGGGTGGAGATTCCCTGGTCGGGGTGGACCTGCTTCAGGACC 241566 Query 1485706 TTGTA 1485710 ||||| Sbjct 241567 TTGTA 241571 >seq549 Length=633838 Score = 141 bits (156), Expect = 1e-27 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| |||||||| |||| |||||| ||| || || || | | Sbjct 154647 TGTACTTGGTGACAGCCTTAGTACCCTCGGAGATAGCGTGCTTGGAGAGCTCACCAGGGA 154588 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||| ||||| ||||| |||| | ||| ||| |||||| | Sbjct 154587 AGAGGAGTCGGCAGGCAGTCTGAATCTCTCGGGAGGAGATTGTGGCCTTCTTGTTGATCT 154528 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || |||||| || ||| ||||| ||||||| |||||| || |||||||||| Sbjct 154527 TGGCAAGGCGGGAAGCTTCGCAGCCGACTCGGTCGAAGATGTCGCACACGAACGAGTTCA 154468 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| ||| ||||||||| || |||||||| ||||||| Sbjct 154467 TGATGGACATGGCCTTGGAGGAGATTCCCTGGTCGGGGTGGACTTGCTTGAGGACCTTGT 154408 Query 1485710 A 1485710 | Sbjct 154407 A 154407 >seq1092 Length=15349 Score = 138 bits (152), Expect = 2e-26 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || ||||||||| ||| |||||||| ||||| || ||||||||| ||| || || || Sbjct 7865 CGGTGTACTTGGAGACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTGGAAAGCTCACCAG 7806 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | || || || || ||||||||||| |||| ||| ||| |||||| Sbjct 7805 GGAAGAGAAGTCGGCAAGCAGTCTGGATCTCTCGGGAAGAGATGGTGGACTTCTTGTTGA 7746 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||| ||| |||||| || | ||||| | ||||||||||| || |||| Sbjct 7745 TCTTGGCCAATCGGGAGGCCTCACAACCAACTCGGTCAAAGATGTCGTTGACGAAGGAGT 7686 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | ||| ||||||| ||| ||||||||| |||||||| || |||| Sbjct 7685 TCATGATAGACATGGCCTTGGTGGAGATTCCCTGGTCGGGGTGGACCTGCTTCAGGACCT 7626 Query 1485707 TGTA 1485710 |||| Sbjct 7625 TGTA 7622 >seq630 Length=113812 Score = 136 bits (150), Expect = 6e-26 Identities = 188/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| | || ||||| ||| | | Sbjct 8238 TGTACTTGGTGACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTAGCAAGTTCTCCGGGGA 8179 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || || ||||||||||||| || |||| ||| || |||||| | | Sbjct 8178 GAAGGAGTCGGACGGCGGTCTGGACTTCTCGGGAAGAGATGGTAGACTTCTTGTTGTATT 8119 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| || || || ||| || |||| || |||| ||||| || |||||||| Sbjct 8118 TGGCG--AGTCGAGAAGCTTCGTTGGCGATTCGCTCGAAAATGTCAGACACGAACGAGTT 8061 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| ||||||||| |||||||| ||||||||||| ||||| Sbjct 8060 CATGATTGACATGGCTTTCGAGGAGATGCCAGTATCGGGGTGGACCTGCTTGAGAACCTT 8001 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | || |||||| || Sbjct 8000 GTAGATGTAGATCGAGTAAGA 7980 Score = 134 bits (148), Expect = 2e-25 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| |||| ||||| ||| | | Sbjct 16706 TGTACTTGGTGACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTGGCAAGTTCTCCGGGGA 16647 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||| || |||| ||| || |||||| Sbjct 16646 GAAGGAGTCGGACAGCGGTCTGGACTTCTCGGGAAGAGATGGTTGACTTCTTGTTGTATT 16587 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || || || ||| || |||| || |||| ||||| || |||||||||| Sbjct 16586 TTGCAAGTCGAGAAGCTTCGTTGGCGATTCGCTCGAAAATGTCAGACACGAACGAGTTCA 16527 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| ||||||||| |||||||| ||||||||||| ||||||| Sbjct 16526 TGATTGACATGGCTTTCGAGGAGATGCCAGTATCGGGGTGGACCTGCTTGAGAACCTTGT 16467 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | || |||||| || Sbjct 16466 AGATGTAGATCGAGTAAGA 16448 >seq572 Length=310451 Score = 132 bits (146), Expect = 8e-25 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| |||| ||||| ||| | | Sbjct 22435 TGTACTTGGTGACAGCCTTTGTTCCCTCAGAAACGGCGTGCTTGGCAAGTTCTCCGGGTA 22494 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||||||||||| || |||| ||| || |||||| || | Sbjct 22495 GGAGGAGTCGGACGGCGGTCTGGACTTCTCGGGAAGAGATAGTCGACTTCTTGTT-GTAC 22553 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || || || || |||| || || | ||||| || ||||||||| Sbjct 22554 TTGGCAAGTCGAGAAGCTTCATTGGCGATTCGCTCAAAAATGTCAGACACGAACGAGTTC 22613 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| ||||||||| || ||||| ||||||||||| |||||| Sbjct 22614 ATGATCGACATGGCTTTTGAGGAGATGCCAGTATCAGGGTGGACCTGCTTGAGAACCTTG 22673 Query 1485709 TA 1485710 || Sbjct 22674 TA 22675 >seq594 Length=218677 Score = 100 bits (110), Expect = 5e-15 Identities = 211/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | | || | |||||| ||| | ||||||||||||||| | ||| Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| |||||||| || ||| ||||| |||||||| ||||||||||| || Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCA--GGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| || | ||| | || | || ||| | ||||||||||| ||| Sbjct 188299 AGCGATGACTCTAACGG-AGTAGGGCGCATCGGCAC-------CGATCCACTTCAGTGCC 188350 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || ||||| ||| | | | |||| ||| ||||| ||| ||||| |||| Sbjct 188351 CAATCAGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTTC 188410 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || || ||| | ||| | ||||| || | ||| |||| |||||||||||| Sbjct 188411 TCTTTCGTGTCGTGGACCAGATTCTCGATCAGCTTGGCGTACATCTCCGAGTGGATGTTT 188470 Query 794638 TCGATGGCGATCT 794650 || || ||||| Sbjct 188471 TCCATCATGATCT 188483 Score = 89.7 bits (98), Expect = 8e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 796173 CATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAG 796232 |||||| || || | || ||||| ||||| |||||||| || || || || ||||| Sbjct 188570 CATGAATCGATCGACGAGATTCTCGTTAACGATTCCGTCGCTTGCAGCAAAGAAAGCGAG 188629 Query 796233 GACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGC 796292 |||||||| || ||| |||| || | ||||| ||||| | || ||||| Sbjct 188630 CACGTGCTTAATGAAGAACTGCTCCTCCTTCTTGAGCTTCTTCCAGTCGTCCATGTCGCG 188689 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACAT 796346 ||||| ||||| || |||| ||||| || || ||| | || ||||||||||| Sbjct 188690 TCCGAGATCGACTTCTTCGGTCGTCCAGAAAGACGCCACTGCTTTTTTGTACAT 188743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916112368053140