Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq654 131 1e-25 seq355 125 5e-24 >seq654 Length=87504 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||| ||||| ||||| |||||||| || ||||| |||| Sbjct 81564 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCT 81623 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || || ||||| Sbjct 81624 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCT 81683 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | | || | || ||||| || || | ||| || || Sbjct 81684 TGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTT 81743 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || || ||||||||||| Sbjct 81744 TTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 125 bits (138), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| ||||| || || | || |||| || || ||||| ||||| || Sbjct 82904 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 82963 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||| ||||||||| |||| | || |||||||| | || || |||||| | Sbjct 82964 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGAC--A 83021 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| |||||||| |||| || ||||| || || ||||| ||||| Sbjct 83022 TTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTG 83081 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 83082 ACAAAGATCTGCATG 83096 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||| ||||| ||||| ||||| || | | |||| |||| Sbjct 81792 AGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 81851 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || |||||||| Sbjct 81852 TCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 81911 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || ||| || || |||| || || ||| Sbjct 81912 TGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTC 81971 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 81972 TTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 >seq355 Length=2689 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||| ||||| ||||| |||||||| || ||||| |||| Sbjct 156 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCT 215 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || || ||||| Sbjct 216 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCT 275 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || ||| || || |||| || || ||| Sbjct 276 TGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTC 335 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 336 TTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 122 bits (134), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| ||||| || || | || |||| || || ||||| ||||| || Sbjct 1952 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2011 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||| ||||||||| |||| | || |||||||| | || || |||||| | Sbjct 2012 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGAC--A 2069 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| |||||||| || | || ||||| || || ||||| ||||| Sbjct 2070 TTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTG 2129 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 2130 ACAAAGATCTGCATG 2144 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || ||| ||||| ||||| |||||||| || ||||| |||| Sbjct 384 AGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCT 443 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || || ||||| Sbjct 444 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCT 503 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || ||| || || |||| || || ||| Sbjct 504 TGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTC 563 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 564 TTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || ||| ||||| ||||| |||||||| || ||||| |||| Sbjct 612 AGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCT 671 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || || ||||| Sbjct 672 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCT 731 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || ||| || || |||| || || ||| Sbjct 732 TGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTC 791 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 792 TTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || ||| ||||| ||||| ||||| || | | |||| |||| Sbjct 840 AGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 899 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| ||||| ||||||||| | || | || |||||||| Sbjct 900 TCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 959 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || ||| || || |||| || || ||| Sbjct 960 TGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTC 1019 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 1020 TTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687798579940