Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02]
1,260 sequences; 70,471,451 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq539 111 1e-18
seq693 109 4e-18
seq530 91.5 1e-12
>seq539
Length=1154401
Score = 111 bits (122), Expect = 1e-18
Identities = 242/358 (68%), Gaps = 7/358 (2%)
Strand=Plus/Minus
Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253
||||||||||| || || | | ||||| || ||||| |||| |||| ||
Sbjct 1069731 TCAAAATCTTCCCCGCCAAGATGAGTATCACCATTTGTAGCGAGCACTTCAAAAACACCT 1069672
Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313
| || | || || |||| || || |||||||| || | ||| || | ||| |||
Sbjct 1069671 TGGTCGATAGTCAGTAGAGATACGTCGAAAGTTCCACCGCCAAGATCGAAGACAAGGACA 1069612
Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373
|| ||||| | | ||| || || |||||||||| ||||| |||||||| ||
Sbjct 1069611 TT--TTTCTC-GACGCCAGATTTGTCGAGTCCATACGCAAGTGCAGCTGCAGTTGGCTCG 1069555
Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433
|| ||||| | | || | || ||||||||| | |||||||||||||| ||||| |
Sbjct 1069554 TTGATAATCCGAATCACTTCAATACCAGCAATCGTGCCTGCATCTTTAGTAGCTTGGCGC 1069495
Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493
|| |||||| ||||| || || ||||||| || || | | || || |||| |
Sbjct 1069494 TGCTCATCGTTGAAATACGCCGGTACAGTAACGACTGCCCTTTTGACCGTTTGACCAAGA 1069435
Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAA--ATCATTGATGAAATTTGTTCTGG 282549
|| | || |||| ||||| || || || | ||||| ||||||||||||||
Sbjct 1069434 TACTCCTCGGCGATTTGCTTCATCTT--TTGAAGGACCATTGCAGAAATTTGTTCTGG 1069379
>seq693
Length=61257
Score = 109 bits (120), Expect = 4e-18
Identities = 177/251 (71%), Gaps = 8/251 (3%)
Strand=Plus/Minus
Query 1106953 TATTCAACAATCGATTATTTAGAACAATCTGGTAAATTAGTCGAAAATGTCAAAGACAAT 1107012
||| ||||||| ||||||||||||||| | || |||||||| || ||| | | ||| |||
Sbjct 44395 TATACAACAATTGATTATTTAGAACAACCAGGAAAATTAGTTGATAATATTAGAGATAAT 44336
Query 1107013 TTGTATGGCCCATTGTGTTTGGCATTTATTTGTCAAAAATATAATATTCATTTAACTTAT 1107072
|| | | ||| | | || || ||| |||| |||||||||||||||| |||
Sbjct 44335 TTATTTTCTCCAATTACCCTTCCAAAAATATGTGAAAATAATAATATTCATTTAACATAT 44276
Query 1107073 TTAGGTACTGGCTGTATTTTTGAAGGACAAAAT-AATTTC--TCGGCTGATG----AAAA 1107125
|| || || || ||||||||| || | ||| || || | | | | | |||
Sbjct 44275 TTGGGAACAGGTTGTATTTTTAAATATAATAATGAACATCCTTTTGGTAAAGAAATAAAT 44216
Query 1107126 GGGTTTTACGGAGAATGATAAACCCAATTTCTTTGGTTCAAGTTATTCCGTAGTAAAAGG 1107185
|||||| | | ||| | | ||||| |||| |||||||| ||||||| |||||||||
Sbjct 44215 GGGTTTAATGAAGATTCA-AAACCTTATTTTTTTGGTTCTGGTTATTCAACAGTAAAAGG 44157
Query 1107186 TTTCACTGATC 1107196
|| || ||||
Sbjct 44156 ATTTACAGATC 44146
Score = 105 bits (116), Expect = 5e-17
Identities = 245/366 (67%), Gaps = 9/366 (2%)
Strand=Plus/Minus
Query 892260 ATTGTGCATTTTGCTGCTCATTCTCATGTCGATAATTCCTTTAAAAATTCTCTTGCTTTT 892319
||| | |||||||| || || || || | | ||||| |||| || |||| | |
Sbjct 40452 ATTATACATTTTGCAGCGCAATCACACGAACAAAATTCATTTACTGATGCTCTCCGGTAT 40393
Query 892320 ACTGAAACAAATGTTTTTGGAACCCATGTTTTACTAGAATGTTCTCGAATGTATGGCAAA 892379
|| | ||| || ||||||| ||| ||| ||||| | || | ||||| |||
Sbjct 40392 ACAAATGATAATATTGTTGGAACACATACATTATTAGAAGCAACAAGATTATATGGTAAA 40333
Query 892380 CTAAAATTATTTTTCCATATGAGTACTGATGAAGTTTATGGTGAA--ATCGATA-CT--- 892433
| | ||| | ||| | |||||||||||||||||| ||| | |||| ||
Sbjct 40332 ATTGAGAAGTTTATTCATGTTTTTACTGATGAAGTTTATGGAGAATCAATGATATCTGTT 40273
Query 892434 -ACGGATAC--TAGTCGTGAAGTTTCTTTATTGTGTCCTACAAATCCTTATGCTGCAACA 892490
||| | | || ||| |||| | || || ||||| ||| |||| || || |||
Sbjct 40272 AACGAAAATCATAAAACAGAACATTCTATTTTATGCCCTACTAATTCTTACGCAGCTACA 40213
Query 892491 AAAGCTGGTGCAGAACACATCGTAAAATCATATTTTTTGTCGTATAAATTACCTATTATT 892550
||||| || |||||| || | |||||||| | || | |||| | || ||| ||
Sbjct 40212 AAAGCAGGCGCAGAATTAATAGCTCAATCATATAATCATTCTTTTAAAATGCCCATTGTT 40153
Query 892551 ATTGCTCGATGTAATAATGTCTATGGTCGTAATCAATATCCTGAAAAACTTATTCCTAAA 892610
||| || | ||||| || ||||| | ||||||||||| |||||| ||||||| |||
Sbjct 40152 ATTAAAAGAGGAAATAACGTTTATGGACCAAATCAATATCCAGAAAAAGTTATTCCAAAA 40093
Query 892611 TTTATT 892616
||||||
Sbjct 40092 TTTATT 40087
>seq530
Length=3167015
Score = 91.5 bits (100), Expect = 1e-12
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 637140 TCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATC 637199
||||||||||||||||||||||||| |||| || || ||||||| ||||||||||| ||
Sbjct 2359156 TCCAAATATTGCTAAAGAAATGCATGTTGGCCACTTGCGATCAACAATTATTGGTGATTC 2359215
Query 637200 TATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGA 637259
||| | | || ||| | ||| |||| ||| | || || || || || ||
Sbjct 2359216 TATCGCAAATCTCTTCGAAGCTTATGGCTACGAAGTTCTCAGAATAAACCACGTCGGCGA 2359275
Query 637260 TTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTA 637297
|||||| || || ||||| ||| | || || || |||
Sbjct 2359276 TTGGGGCACACAGTTCGGCATGCTCATCGCACATCTTA 2359313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740568539324760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |