Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq539 111 1e-18 seq693 109 4e-18 seq530 91.5 1e-12 >seq539 Length=1154401 Score = 111 bits (122), Expect = 1e-18 Identities = 242/358 (68%), Gaps = 7/358 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||||||||| || || | | ||||| || ||||| |||| |||| || Sbjct 1069731 TCAAAATCTTCCCCGCCAAGATGAGTATCACCATTTGTAGCGAGCACTTCAAAAACACCT 1069672 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | || | || || |||| || || |||||||| || | ||| || | ||| ||| Sbjct 1069671 TGGTCGATAGTCAGTAGAGATACGTCGAAAGTTCCACCGCCAAGATCGAAGACAAGGACA 1069612 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || ||||| | | ||| || || |||||||||| ||||| |||||||| || Sbjct 1069611 TT--TTTCTC-GACGCCAGATTTGTCGAGTCCATACGCAAGTGCAGCTGCAGTTGGCTCG 1069555 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || ||||| | | || | || ||||||||| | |||||||||||||| ||||| | Sbjct 1069554 TTGATAATCCGAATCACTTCAATACCAGCAATCGTGCCTGCATCTTTAGTAGCTTGGCGC 1069495 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || |||||| ||||| || || ||||||| || || | | || || |||| | Sbjct 1069494 TGCTCATCGTTGAAATACGCCGGTACAGTAACGACTGCCCTTTTGACCGTTTGACCAAGA 1069435 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAA--ATCATTGATGAAATTTGTTCTGG 282549 || | || |||| ||||| || || || | ||||| |||||||||||||| Sbjct 1069434 TACTCCTCGGCGATTTGCTTCATCTT--TTGAAGGACCATTGCAGAAATTTGTTCTGG 1069379 >seq693 Length=61257 Score = 109 bits (120), Expect = 4e-18 Identities = 177/251 (71%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 1106953 TATTCAACAATCGATTATTTAGAACAATCTGGTAAATTAGTCGAAAATGTCAAAGACAAT 1107012 ||| ||||||| ||||||||||||||| | || |||||||| || ||| | | ||| ||| Sbjct 44395 TATACAACAATTGATTATTTAGAACAACCAGGAAAATTAGTTGATAATATTAGAGATAAT 44336 Query 1107013 TTGTATGGCCCATTGTGTTTGGCATTTATTTGTCAAAAATATAATATTCATTTAACTTAT 1107072 || | | ||| | | || || ||| |||| |||||||||||||||| ||| Sbjct 44335 TTATTTTCTCCAATTACCCTTCCAAAAATATGTGAAAATAATAATATTCATTTAACATAT 44276 Query 1107073 TTAGGTACTGGCTGTATTTTTGAAGGACAAAAT-AATTTC--TCGGCTGATG----AAAA 1107125 || || || || ||||||||| || | ||| || || | | | | | ||| Sbjct 44275 TTGGGAACAGGTTGTATTTTTAAATATAATAATGAACATCCTTTTGGTAAAGAAATAAAT 44216 Query 1107126 GGGTTTTACGGAGAATGATAAACCCAATTTCTTTGGTTCAAGTTATTCCGTAGTAAAAGG 1107185 |||||| | | ||| | | ||||| |||| |||||||| ||||||| ||||||||| Sbjct 44215 GGGTTTAATGAAGATTCA-AAACCTTATTTTTTTGGTTCTGGTTATTCAACAGTAAAAGG 44157 Query 1107186 TTTCACTGATC 1107196 || || |||| Sbjct 44156 ATTTACAGATC 44146 Score = 105 bits (116), Expect = 5e-17 Identities = 245/366 (67%), Gaps = 9/366 (2%) Strand=Plus/Minus Query 892260 ATTGTGCATTTTGCTGCTCATTCTCATGTCGATAATTCCTTTAAAAATTCTCTTGCTTTT 892319 ||| | |||||||| || || || || | | ||||| |||| || |||| | | Sbjct 40452 ATTATACATTTTGCAGCGCAATCACACGAACAAAATTCATTTACTGATGCTCTCCGGTAT 40393 Query 892320 ACTGAAACAAATGTTTTTGGAACCCATGTTTTACTAGAATGTTCTCGAATGTATGGCAAA 892379 || | ||| || ||||||| ||| ||| ||||| | || | ||||| ||| Sbjct 40392 ACAAATGATAATATTGTTGGAACACATACATTATTAGAAGCAACAAGATTATATGGTAAA 40333 Query 892380 CTAAAATTATTTTTCCATATGAGTACTGATGAAGTTTATGGTGAA--ATCGATA-CT--- 892433 | | ||| | ||| | |||||||||||||||||| ||| | |||| || Sbjct 40332 ATTGAGAAGTTTATTCATGTTTTTACTGATGAAGTTTATGGAGAATCAATGATATCTGTT 40273 Query 892434 -ACGGATAC--TAGTCGTGAAGTTTCTTTATTGTGTCCTACAAATCCTTATGCTGCAACA 892490 ||| | | || ||| |||| | || || ||||| ||| |||| || || ||| Sbjct 40272 AACGAAAATCATAAAACAGAACATTCTATTTTATGCCCTACTAATTCTTACGCAGCTACA 40213 Query 892491 AAAGCTGGTGCAGAACACATCGTAAAATCATATTTTTTGTCGTATAAATTACCTATTATT 892550 ||||| || |||||| || | |||||||| | || | |||| | || ||| || Sbjct 40212 AAAGCAGGCGCAGAATTAATAGCTCAATCATATAATCATTCTTTTAAAATGCCCATTGTT 40153 Query 892551 ATTGCTCGATGTAATAATGTCTATGGTCGTAATCAATATCCTGAAAAACTTATTCCTAAA 892610 ||| || | ||||| || ||||| | ||||||||||| |||||| ||||||| ||| Sbjct 40152 ATTAAAAGAGGAAATAACGTTTATGGACCAAATCAATATCCAGAAAAAGTTATTCCAAAA 40093 Query 892611 TTTATT 892616 |||||| Sbjct 40092 TTTATT 40087 >seq530 Length=3167015 Score = 91.5 bits (100), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 637140 TCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATC 637199 ||||||||||||||||||||||||| |||| || || ||||||| ||||||||||| || Sbjct 2359156 TCCAAATATTGCTAAAGAAATGCATGTTGGCCACTTGCGATCAACAATTATTGGTGATTC 2359215 Query 637200 TATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGA 637259 ||| | | || ||| | ||| |||| ||| | || || || || || || Sbjct 2359216 TATCGCAAATCTCTTCGAAGCTTATGGCTACGAAGTTCTCAGAATAAACCACGTCGGCGA 2359275 Query 637260 TTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTA 637297 |||||| || || ||||| ||| | || || || ||| Sbjct 2359276 TTGGGGCACACAGTTCGGCATGCTCATCGCACATCTTA 2359313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740568539324760