Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq1133 86.0 6e-12 seq577 86.0 6e-12 seq570 86.0 6e-12 seq531 86.0 6e-12 >seq1133 Length=13317 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCG 94630 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 2354 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG 2298 >seq577 Length=296349 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCG 94630 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 6014 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG 6070 >seq570 Length=330156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCG 94630 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 3943 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG 3999 >seq531 Length=2850711 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCG 94630 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 1426522 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG 1426466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494497811536800