Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02]
1,260 sequences; 70,471,451 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq654 118 2e-21
seq355 118 2e-21
>seq654
Length=87504
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || || |||||||| || || || || || | | | |||
Sbjct 81789 CGGAGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA 81848
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || || || ||||| |||| || || ||||| || || ||||||||
Sbjct 81849 TCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTG 81908
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| || || || || || || || || | ||| ||||| | || |||
Sbjct 81909 TCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATC 81968
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || ||||| || || ||||||||
Sbjct 81969 GTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003
Score = 96.9 bits (106), Expect = 7e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||| | ||||| || | |||| |||||| || || || || || ||||| |
Sbjct 82231 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 82290
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || ||| ||| ||||| || || || ||||||||||| |||| || |||||||| |
Sbjct 82291 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 82350
Query 82702 GTATTCCTTCCTTATC 82717
| ||||||||||| ||
Sbjct 82351 GAATTCCTTCCTTGTC 82366
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | || || || || ||||| || || || |||||||| ||| ||| |||
Sbjct 83109 CGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCG 83168
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || ||||| ||||| |||| || || ||||| || |||||||||||
Sbjct 83169 TCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTG 83228
Query 82716 TC 82717
||
Sbjct 83229 TC 83230
>seq355
Length=2689
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || |||||||| || || || || || ||| | | ||
Sbjct 153 CGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCA 212
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || || || ||||| |||| || || ||||| || || ||||| ||
Sbjct 213 TCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTG 272
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || || || || || || || || || | ||| ||||| | || |||
Sbjct 273 TCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATC 332
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || ||||| || || ||||||||
Sbjct 333 GTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || |||||||| || || || || || | | | ||| ||||| || ||
Sbjct 849 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGC 908
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||| || || ||||| || || |||||||| ||||| |||||
Sbjct 909 TTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTA 968
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || || || || || || || | ||| ||||| | || ||||||||||| ||
Sbjct 969 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 1028
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || ||||||||
Sbjct 1029 AAAGTCTTGACGAAGATCTGCAT 1051
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || |||||||| || || || || || ||| | | || ||||| || ||
Sbjct 393 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 452
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||| || || ||||| || || ||||| || ||||| || ||
Sbjct 453 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 512
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || || || || || || || | ||| ||||| | || ||||||||||| ||
Sbjct 513 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 572
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || ||||||||
Sbjct 573 AAAGTCTTGACGAAGATCTGCAT 595
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || |||||||| || || || || || ||| | | || ||||| || ||
Sbjct 621 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 680
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| |||| || || ||||| || || ||||| || ||||| || ||
Sbjct 681 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 740
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || || || || || || || | ||| ||||| | || ||||||||||| ||
Sbjct 741 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 800
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || ||||||||
Sbjct 801 AAAGTCTTGACGAAGATCTGCAT 823
Score = 96.9 bits (106), Expect = 7e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||| | ||||| || | |||| |||||| || || || || || ||||| |
Sbjct 1279 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 1338
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || ||| ||| ||||| || || || ||||||||||| |||| || |||||||| |
Sbjct 1339 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 1398
Query 82702 GTATTCCTTCCTTATC 82717
| ||||||||||| ||
Sbjct 1399 GAATTCCTTCCTTGTC 1414
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | || || || || |||||||| || || |||||||| ||| ||| |||
Sbjct 2157 CGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCG 2216
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || ||||| ||||| |||| || || ||||| || |||||||||||
Sbjct 2217 TCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTG 2276
Query 82716 TC 82717
||
Sbjct 2277 TC 2278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981811349627140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |