Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq654 118 2e-21 seq355 118 2e-21 >seq654 Length=87504 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || |||||||| || || || || || | | | ||| Sbjct 81789 CGGAGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA 81848 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || || ||||| |||| || || ||||| || || |||||||| Sbjct 81849 TCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTG 81908 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || || || || || | ||| ||||| | || ||| Sbjct 81909 TCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATC 81968 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| || || |||||||| Sbjct 81969 GTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| || | |||| |||||| || || || || || ||||| | Sbjct 82231 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 82290 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||| ||||| || || || ||||||||||| |||| || |||||||| | Sbjct 82291 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 82350 Query 82702 GTATTCCTTCCTTATC 82717 | ||||||||||| || Sbjct 82351 GAATTCCTTCCTTGTC 82366 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || || || ||||| || || || |||||||| ||| ||| ||| Sbjct 83109 CGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCG 83168 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| |||| || || ||||| || ||||||||||| Sbjct 83169 TCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTG 83228 Query 82716 TC 82717 || Sbjct 83229 TC 83230 >seq355 Length=2689 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || |||||||| || || || || || ||| | | || Sbjct 153 CGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCA 212 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || || ||||| |||| || || ||||| || || ||||| || Sbjct 213 TCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTG 272 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || || || || || || || || || | ||| ||||| | || ||| Sbjct 273 TCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATC 332 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| || || |||||||| Sbjct 333 GTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || |||||||| || || || || || | | | ||| ||||| || || Sbjct 849 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGC 908 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||| || || ||||| || || |||||||| ||||| ||||| Sbjct 909 TTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTA 968 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || | ||| ||||| | || ||||||||||| || Sbjct 969 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 1028 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 1029 AAAGTCTTGACGAAGATCTGCAT 1051 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || |||||||| || || || || || ||| | | || ||||| || || Sbjct 393 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 452 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||| || || ||||| || || ||||| || ||||| || || Sbjct 453 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 512 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || | ||| ||||| | || ||||||||||| || Sbjct 513 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 572 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 573 AAAGTCTTGACGAAGATCTGCAT 595 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || |||||||| || || || || || ||| | | || ||||| || || Sbjct 621 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 680 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| |||| || || ||||| || || ||||| || ||||| || || Sbjct 681 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 740 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || | ||| ||||| | || ||||||||||| || Sbjct 741 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 800 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 801 AAAGTCTTGACGAAGATCTGCAT 823 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| || | |||| |||||| || || || || || ||||| | Sbjct 1279 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 1338 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||| ||||| || || || ||||||||||| |||| || |||||||| | Sbjct 1339 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 1398 Query 82702 GTATTCCTTCCTTATC 82717 | ||||||||||| || Sbjct 1399 GAATTCCTTCCTTGTC 1414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || || || |||||||| || || |||||||| ||| ||| ||| Sbjct 2157 CGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCG 2216 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| |||| || || ||||| || ||||||||||| Sbjct 2217 TCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTG 2276 Query 82716 TC 82717 || Sbjct 2277 TC 2278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981811349627140