Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq562 93.3 6e-14 seq1186 89.7 7e-13 seq591 89.7 7e-13 seq569 89.7 7e-13 seq548 89.7 7e-13 seq547 89.7 7e-13 seq545 89.7 7e-13 seq530 89.7 7e-13 seq542 86.0 8e-12 >seq562 Length=412614 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 16385 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 16444 Query 8723 CGAGGAGCA 8731 | |||||| Sbjct 16445 CACGGAGCA 16453 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 19234 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 19293 Query 8723 CGAGGAGCA 8731 | |||||| Sbjct 19294 CACGGAGCA 19302 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||| |||||||||||||| ||||| |||| ||||| | |||| ||||||||||| Sbjct 16376 CCCA-TCCGTGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTC 16434 Query 11784 GATTCCCCGACGAGGAG 11800 ||||||||||| |||| Sbjct 16435 GATTCCCCGACACGGAG 16451 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 19234 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 19293 Query 11794 CGAGGAG 11800 | |||| Sbjct 19294 CACGGAG 19300 >seq1186 Length=10941 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 6459 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 6400 Query 8723 CGAGGAG 8729 | |||| Sbjct 6399 CACGGAG 6393 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 6459 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 6400 Query 11794 CGAGGAG 11800 | |||| Sbjct 6399 CACGGAG 6393 >seq591 Length=225911 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 47978 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 47919 Query 8723 CGAGGAG 8729 | |||| Sbjct 47918 CACGGAG 47912 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 47978 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 47919 Query 11794 CGAGGAG 11800 | |||| Sbjct 47918 CACGGAG 47912 >seq569 Length=348850 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 205396 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 205337 Query 8723 CGAGGAG 8729 | |||| Sbjct 205336 CACGGAG 205330 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 312660 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 312719 Query 8723 CGAGGAG 8729 | |||| Sbjct 312720 CACGGAG 312726 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 205396 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 205337 Query 11794 CGAGGAG 11800 | |||| Sbjct 205336 CACGGAG 205330 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 312660 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 312719 Query 11794 CGAGGAG 11800 | |||| Sbjct 312720 CACGGAG 312726 >seq548 Length=640992 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 437166 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 437225 Query 8723 CGAGGAG 8729 | |||| Sbjct 437226 CACGGAG 437232 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 437166 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 437225 Query 11794 CGAGGAG 11800 | |||| Sbjct 437226 CACGGAG 437232 >seq547 Length=691497 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 193073 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 193014 Query 8723 CGAGGAG 8729 | |||| Sbjct 193013 CACGGAG 193007 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| ||| |||||||||||||| ||||| |||| ||||| | |||| |||||||||||| Sbjct 193082 CCAATCCGTGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCG 193023 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 193022 ATTCCCCGACACGGAG 193007 >seq545 Length=868584 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 21287 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 21228 Query 8723 CGAGGAG 8729 | |||| Sbjct 21227 CACGGAG 21221 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 21287 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 21228 Query 11794 CGAGGAG 11800 | |||| Sbjct 21227 CACGGAG 21221 >seq530 Length=3167015 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 254957 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 255016 Query 8723 CGAGGAG 8729 | |||| Sbjct 255017 CTCGGAG 255023 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11735 GTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 11793 |||||||||||||| ||||| |||| ||||| | |||| ||||||||||||||||||||| Sbjct 254957 GTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 255016 Query 11794 CGAGGAG 11800 | |||| Sbjct 255017 CTCGGAG 255023 >seq542 Length=1019697 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||| | |||||||||| ||||| | |||| ||||||||||||||||||||| Sbjct 104093 GTTAGTATAGTGATGAGTATTCCCGCCTGTCACGCGGGCGACCGGGGTTCGATTCCCCGA 104152 Query 8723 CGAGGAG 8729 | |||| Sbjct 104153 CACGGAG 104159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652834517694400