Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq654 134 1e-26 seq355 134 1e-26 seq532 91.5 1e-13 seq594 86.0 6e-12 >seq654 Length=87504 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| ||| | || || ||||||||||| Sbjct 82035 GTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCA-TCTTCAAGCTGCTTGCC 82093 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 82094 AGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTT 82153 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || || || |||| ||||| ||| ||||| |||| || Sbjct 82154 GACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGT 82213 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 82214 TTTGACGAAAATCTGCAT 82231 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| || ||||| || | ||| | || || ||| Sbjct 81570 AAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGC 81629 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || ||||||||||| || || |||||||| ||||| ||| Sbjct 81630 TGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATT 81689 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||||| | ||| || |||| ||||| ||||| ||| Sbjct 81690 TTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTACCG 81749 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 81750 GTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || ||| ||| | || || ||||||||||| Sbjct 81807 GTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCAAGCTGCTTGCC 81865 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || ||||||||||| |||||| ||| Sbjct 81866 GGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTT 81925 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | || || || || | |||| || |||||||| | ||| Sbjct 81926 CACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGT 81985 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 81986 CTTGACGAAGATCTGCAT 82003 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 82941 TCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTG 83000 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | ||| | ||||| | | ||| || || | |||| | Sbjct 83001 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATG 83060 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||||||| ||||| || || || ||||||||| Sbjct 83061 GTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 83096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| || || || ||||| ||| | ||| | |||||||||||||||||| Sbjct 82562 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCA 82621 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 82622 GCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTC 82665 >seq355 Length=2689 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| ||| | || || ||||||||||| Sbjct 1083 GTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCA-TCTTCAAGCTGCTTGCC 1141 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 1142 AGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTT 1201 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || || || |||| ||||| ||| ||||| |||| || Sbjct 1202 GACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGT 1261 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 1262 TTTGACGAAAATCTGCAT 1279 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 1989 TCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTG 2048 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | ||| | ||||| | | ||| || |||| |||| | Sbjct 2049 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATG 2108 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||||||| ||||| || || || ||||||||| Sbjct 2109 GTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 2144 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || ||| ||| | || || ||||||||||| Sbjct 855 GTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCAAGCTGCTTGCC 913 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || ||||||||||| |||||| ||| Sbjct 914 GGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTT 973 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | || || || || | |||| || |||||||| | ||| Sbjct 974 CACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGT 1033 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1034 CTTGACGAAGATCTGCAT 1051 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| || ||||| || | ||| | || || ||| Sbjct 162 AAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGC 221 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || ||||||||||| || || |||||||| ||||| ||| Sbjct 222 TGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATT 281 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||| | || || || || | |||| || |||||| Sbjct 282 TTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCG 341 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || | ||| || ||||| |||||||| Sbjct 342 GTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || | ||| | || || ||||||||||| Sbjct 399 GTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCG 458 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || |||||||| ||||| ||| || ||| Sbjct 459 GCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTC 518 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || || || || | |||| || |||||||| | ||| Sbjct 519 ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTC 578 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 579 TTGACGAAGATCTGCAT 595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || | ||| | || || ||||||||||| Sbjct 627 GTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCG 686 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || |||||||| ||||| ||| || ||| Sbjct 687 GCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTC 746 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || || || || | |||| || |||||||| | ||| Sbjct 747 ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTC 806 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 807 TTGACGAAGATCTGCAT 823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| || || || ||||| ||| | ||| | |||||||||||||||||| Sbjct 1610 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCA 1669 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 1670 GCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTC 1713 >seq532 Length=2515153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| ||| | || | | | |||||||| Sbjct 2299455 AAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCA-TCCTCGAG 2299513 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||||| || ||| | ||||| ||||||||||| |||||||| ||||||||||| Sbjct 2299514 CTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTC 2299567 >seq594 Length=218677 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 120664 CCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTC 120723 || ||||| | || || ||||||||| || || | ||||||||||| |||| || || Sbjct 188180 CCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTTC 188239 Query 120724 TTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAG 120783 |||| |||| |||||||||||| ||| || ||||| | ||| || ||| ||| || Sbjct 188240 TTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAAA 188299 Query 120784 GCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCG 120843 |||| | | ||| | | ||| | | |||||||||||| ||||| || Sbjct 188300 GCGATGACTCTAACGGAGTAGGGCGC---ATCGGCACCGATCCACTTCAGTGCCCAATCA 188356 Query 120844 GCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTT 120881 ||||| || | ||||||| ||||| |||||| Sbjct 188357 GCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTT 188394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413186122400