Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq532 93.3 1e-13 >seq532 Length=2515153 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| ||||| || || |||||||| | ||||| ||||| ||| | Sbjct 1398551 AGACATTTGCATGACGGAGACATCGTCCTGTTCAACCGTCAACCTTCACTTCATCGTCAG 1398492 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || |||||| |||| ||||||||||| | || | ||||| ||||| || | ||| Sbjct 1398491 TCGATGATGAGTCATCAAGTCAAAGTAATGCCTTGGAAAACATTCCGATTCAACG--AGT 1398434 Query 305426 GCTT--GTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | || | ||||| ||||| ||||| || || |||||||||||| | || | || | Sbjct 1398433 GCGTCTGTGCTCCTTACAATGCTGATTTCGACGGTGATGAAATGAATGTCCACTTGCCAC 1398374 Query 305484 AATCAAA 305490 || |||| Sbjct 1398373 AAACAAA 1398367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186793640390860