Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq355 104 2e-17 seq654 95.1 8e-15 >seq355 Length=2689 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| |||||| || |||||||| || || || ||||| | || || Sbjct 159 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 218 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || ||||| || || | |||||||| ||| | || | ||||||||||| Sbjct 219 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 278 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||| || | ||| | ||||| | ||| || |||| ||||||||| || Sbjct 279 ATTTTGGCCTTC-ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTT 337 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || |||||||||||| Sbjct 338 GCCGGTTAAAGTCTTGACGAAGATCTGCATA 368 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || || || ||||| | || || | || || ||||| || Sbjct 404 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 463 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| ||| | || | ||||||||||| ||||| ||| || | Sbjct 464 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTC-ACGT 522 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| | ||| || |||| ||||||||| || || ||||| || || | Sbjct 523 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 582 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 583 CGAAGATCTGCATA 596 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || || || ||||| | || || | || || ||||| || Sbjct 632 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 691 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| ||| | || | ||||||||||| ||||| ||| || | Sbjct 692 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTC-ACGT 750 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| | ||| || |||| ||||||||| || || ||||| || || | Sbjct 751 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 810 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 811 CGAAGATCTGCATA 824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| ||||| | ||||| | || || | || || ||||| || Sbjct 860 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 919 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| ||| | || | |||||| ||||| || || |||| | | Sbjct 920 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 978 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| | ||| || |||| ||||||||| || || ||||| || || | Sbjct 979 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 1038 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 1039 CGAAGATCTGCATA 1052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | || | ||| |||||| ||| ||||| |||||||| ||||| Sbjct 1579 ACCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 1638 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || || || || || || | |||||||| ||| |||| Sbjct 1639 GAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGG 1698 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 1699 GATACCTTCTTTGTC 1713 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||||||||| |||||||| || || || || || | || || | || Sbjct 1940 ATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTG 1999 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || |||||||| || | |||||||| ||| |||| | |||||| ||||| || || Sbjct 2000 CTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTT 2059 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| | ||| || | |||||| | || || || | ||||| ||||| || | Sbjct 2060 GGCTTTGA-CATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGG 2118 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || |||||||||||||| Sbjct 2119 TGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| ||||| | ||| | ||| ||| ||||| |||||||||||||| Sbjct 1280 ACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGA 1339 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | || || || ||||| || | |||||||||||| | || Sbjct 1340 GAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGG 1399 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 1400 AATTCCTTCCTTGTC 1414 >seq654 Length=87504 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| |||||| || |||||||| || || || ||||| | || || Sbjct 81567 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 81626 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || ||||| || || | |||||||| ||| | || | ||||||||||| Sbjct 81627 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 81686 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||| || | || | ||||||| | || || || | ||||| ||||| Sbjct 81687 ATTTTGGCCTTC-ACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTT 81745 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | ||||| || |||||||||||| Sbjct 81746 ACCGGTAAGGGTTTTGACGAAGATCTGCATA 81776 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||||||||| |||||||| || || || || || | || || | || Sbjct 82892 ATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTG 82951 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || |||||||| || | |||||||| ||| |||| | |||||| ||||| || || Sbjct 82952 CTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTT 83011 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| | ||| || | |||||| | || || |||| ||||| ||||| || | Sbjct 83012 GGCTTTGA-CATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGG 83070 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || |||||||||||||| Sbjct 83071 TGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| ||||| | ||||| | || || | || || ||||| || Sbjct 81812 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 81871 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| ||| | || | |||||| ||||| || || |||| | | Sbjct 81872 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 81930 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| | ||| || |||| ||||||||| || || ||||| || || | Sbjct 81931 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 81990 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 81991 CGAAGATCTGCATA 82004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | || | ||| |||||| ||| ||||| |||||||| ||||| Sbjct 82531 ACCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 82590 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || || || || || || | |||||||| ||| |||| Sbjct 82591 GAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGG 82650 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 82651 GATACCTTCTTTGTC 82665 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| ||||| | ||| | ||| ||| ||||| |||||||||||||| Sbjct 82232 ACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGA 82291 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | || || || ||||| || | |||||||||||| | || Sbjct 82292 GAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGG 82351 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 82352 AATTCCTTCCTTGTC 82366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698952339200