Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq530 140 5e-27 seq545 111 2e-18 seq630 104 3e-16 seq538 98.7 1e-14 seq572 96.9 5e-14 seq563 95.1 2e-13 seq1092 91.5 2e-12 seq549 91.5 2e-12 >seq530 Length=3167015 Score = 140 bits (154), Expect = 5e-27 Identities = 172/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| || || || || | | |||| || | Sbjct 1746625 ATCTACAAGGTGCTGAAGCAAGTTCATCCGGACACGGGCATGTCATCG------AATGCG 1746572 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||| |||||||| ||||||| |||| | ||| || Sbjct 1746571 ATGTCGATCATGAACTCGTTTGTGAACGACATCTTCGACCGGATCGCGAACGAAGCTTCA 1746512 Query 725031 CGCCTGGC-GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 |||||||| ||| || |||||| |||||| | | ||||||||||||||||| || Sbjct 1746511 CGCCTGGCTGCGATC-AACAAGAAGTCGACGATCTCCTCCCGCGAGATCCAGACCGCAGT 1746453 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| || | | ||| |||||||| | |||||| || || || ||||||| Sbjct 1746452 GCGCCTGCTCCTTCCCGGTGAACTGGCAAAGCACGCAGTTTCTGAAGGCACCA 1746400 >seq545 Length=868584 Score = 111 bits (122), Expect = 2e-18 Identities = 168/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| |||||| |||| | |||||||| | || Sbjct 35516 ATCTACAAGGTCCTGAAGCAGGTTCACCCCGACACCGGTATT---TCCTCCAA---GGCC 35463 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| |||| || |||| || ||| ||| Sbjct 35462 ATGTCCATCATGAACTCGTTCGTGTCCGACATCTTCGAGCGAATCGCCAACGAAGCCTCC 35403 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG-CGCGAGA--TCCAGACCGCC 725087 || || || | ||||||| || ||| | | | ||||| ||||||||||| Sbjct 35402 CGACTCGCCAAGTACAACAAG---AAGTCGACCATTTCTTCCCGAGAAGTCCAGACCGCC 35346 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || || | | ||| ||||| |||| |||||||||||| || || |||| Sbjct 35345 GTACGACTCCTCCTCCCCGGAGAACTCGCCAAGCACGCCGTCTCTGAAGGAACCA 35291 >seq630 Length=113812 Score = 104 bits (114), Expect = 3e-16 Identities = 173/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || ||||||||||| ||||||||||| |||||| || ||| Sbjct 7980 TCTTACTCGATCTACATCTACAAGGTTCTCAAGCAGGTCCACCCCGATAC---TGGCATC 8036 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 ||||| || || ||||||| |||||||||||||| || ||||| |||| || ||| Sbjct 8037 TCCTCGAA--AG-CCATGTCAATCATGAACTCGTTCGTGTCTGACATTTTCGAGCGAATC 8093 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | || ||| || ||| || || | ||||||| || ||| | || || Sbjct 8094 GCCAACGAAGCTTCTCGACTCGCCAAATACAACAAGAAGTCTACCATCTCTTCCCGAGAA 8153 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||| || || | | | ||| ||||| || | ||||||||| || ||| Sbjct 8154 GTCCAGACCGCCGTCCGACTCCTTCTCCCCGGAGAACTTGCTAAGCACGCCGTTTCTGAG 8213 Query 725136 GGCACCA 725142 || |||| Sbjct 8214 GGAACCA 8220 Score = 104 bits (114), Expect = 3e-16 Identities = 173/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || ||||||||||| ||||||||||| |||||| || ||| || Sbjct 16448 TCTTACTCGATCTACATCTACAAGGTTCTCAAGCAGGTCCACCCCGATAC---TGG--CA 16502 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | |||| || ||||||| |||||||||||||| || ||||| |||| || ||| Sbjct 16503 T-CTCCTCGAAAGCCATGTCAATCATGAACTCGTTCGTGTCTGACATTTTCGAGCGAATC 16561 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | || ||| || ||| || || | ||||||| || ||| | || || Sbjct 16562 GCCAACGAAGCTTCTCGACTTGCAAAATACAACAAGAAGTCAACCATCTCTTCCCGAGAA 16621 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||| || || || | | | ||| ||||| |||| ||||||||| || ||| Sbjct 16622 GTCCAGACCGCTGTCCGACTCCTTCTCCCCGGAGAACTTGCCAAGCACGCCGTTTCTGAG 16681 Query 725136 GGCACCA 725142 || |||| Sbjct 16682 GGAACCA 16688 >seq538 Length=1333408 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| |||||| || | | || ||| || |||| || Sbjct 241574 ATCTACAAGGTCCTGAAGCAGGTCCACCCC-GACCAG--GGAATCTCCACC--CAAGGCC 241520 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| |||||||||||||| | ||||| | || ||||||| Sbjct 241519 ATGTCTATCATGAACTCCTTTGTCAACGACATCTTTGACCGAGTTGGTTGCGAGGCCTCC 241460 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| ||||||| ||| ||| | || ||||||||||| || Sbjct 241459 CGATTGGCCAAGATCAACAAGAAGTCCACCATCTCTTCCCGAGAGATCCAGACTGCTTGC 241400 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | || || || ||| |||||||||||| ||||| |||| Sbjct 241399 CGACTCCTCTTCCCTGGTGAGCTTTCCAAGCACGCCGTCTCTGAGGGAACCA 241348 >seq572 Length=310451 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||||| ||||| || ||| ||||| || || || Sbjct 22678 ATCTACAAGGTTCTCAAGCAGGTCCACCCTGATAC---TGGCATCTCCTCAAA--AG-CC 22625 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || ||||| | || || |||| || || || | Sbjct 22624 ATGTCGATCATGAACTCGTTCGTGTCTGACATTTTTGAGCGAATCGCCAATGAAGCTTCT 22565 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | ||||||| || ||| | || || ||||||||||||| Sbjct 22564 CGACTTGCCAAGTACAACAAGAAGTCGACTATCTCTTCCCGAGAAGTCCAGACCGCCGTC 22505 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | ||| ||||| |||| ||||||||| || ||||| || Sbjct 22504 CGACTCCTCCTACCCGGAGAACTTGCCAAGCACGCCGTTTCTGAGGGAAC 22455 >seq563 Length=403863 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||| || |||||| || | | || |||||||| || | Sbjct 313772 ATCTACAAGGTCCTCAAGCAAGTCCACCCC-GACCAG--GGAATCTCCTCCAA--AG-CT 313719 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| ||||||| ||||| ||| || Sbjct 313718 ATGTCCATCATGAACTCGTTCGTGTGCGACATCTTCGACCGAGTCGGCTGCGAAGCTTCC 313659 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || ||||||| ||| ||| | | || ||||| ||||| ||| Sbjct 313658 CGCCTTGCCAAAATCAACAAGAAGGCCACTATCTCCTCCCGAGAGATTCAGACTGCCTGC 313599 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | || || || ||| |||||| ||||||||||||||| Sbjct 313598 CGACTCCTCTTCCCTGGTGAGCTCTCCAAACACGCCATCTCCGAGGGCACCA 313547 >seq1092 Length=15349 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| |||||| ||| || ||| |||| |||| || Sbjct 7619 ATCTACAAGGTCCTGAAGCAGGTCCACCCCG--ACCA---GGGAATC-TCCACCAAGGCC 7672 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||||| | ||||| | || |||||| Sbjct 7673 ATGTCTATCATGAACTCCTTCGTCAACGACATCTTTGACCGAGTTGGTTGTGAGGCCTCC 7732 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| ||||||| ||| ||| | || ||||||||||| || Sbjct 7733 CGATTGGCCAAGATCAACAAGAAGTCCACCATCTCTTCCCGAGAGATCCAGACTGCTTGC 7792 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | || || || ||| ||||||||| || ||||| |||| Sbjct 7793 CGACTTCTCTTCCCTGGTGAGCTTTCCAAGCACGCCGTTTCTGAGGGAACCA 7844 >seq549 Length=633838 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||| || |||||| ||| || ||| ||| |||| || Sbjct 154404 ATCTACAAGGTCCTCAAGCAAGTCCACCCCG--ACCA---GGGAATC-TCCTCCAAGGCC 154457 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| ||||||| ||||| ||| || Sbjct 154458 ATGTCCATCATGAACTCGTTCGTGTGCGACATCTTCGACCGAGTCGGCTGCGAAGCTTCC 154517 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || ||||||| ||| ||| | | || ||||| ||||| ||| Sbjct 154518 CGCCTTGCCAAGATCAACAAGAAGGCCACAATCTCCTCCCGAGAGATTCAGACTGCCTGC 154577 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | || || || ||| |||||| |||||||||| || Sbjct 154578 CGACTCCTCTTCCCTGGTGAGCTCTCCAAGCACGCTATCTCCGAGGGTAC 154627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177689670684120