Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq654 98.7 9e-16 seq355 98.7 9e-16 >seq654 Length=87504 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| |||||| || | || || |||||||| || || || Sbjct 81812 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 81871 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||| |||||| ||||| || Sbjct 81872 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 81930 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | ||| || || | ||||||||| || || || ||||| || | Sbjct 81931 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 81990 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 81991 CGAAGATCTGCAT 82003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | |||||| || | || || |||||||| || || || Sbjct 82040 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 82099 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | ||||||||| ||| || ||| | | Sbjct 82100 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 82159 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | ||| ||||| | ||||| || || || ||||| ||||| || Sbjct 82160 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 82219 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 82220 GAAAATCTGCAT 82231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||| | ||| || ||| ||||||||| ||||||||||||| Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || |||||||| || ||||| || | |||||||| || | ||| Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 35630 ACGCTCTCCTTGTCC 35644 | | ||||||||| Sbjct 82353 ATTCCTTCCTTGTCC 82367 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||||||||| || | | ||||| | || || |||||||| || ||||| Sbjct 82904 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 82963 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | ||||||||| |||||| || | | | Sbjct 82964 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 83023 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||||| | ||||| ||||| || || | ||| || || Sbjct 83024 CTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 83083 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 83084 AAAGATCTGCAT 83095 >seq355 Length=2689 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| |||||| || | || || |||||||| || || || Sbjct 860 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 919 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||| |||||| ||||| || Sbjct 920 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 978 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | ||| || || | ||||||||| || || || ||||| || | Sbjct 979 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 1038 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 1039 CGAAGATCTGCAT 1051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | |||||| || | || || |||||||| || || || Sbjct 1088 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 1147 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | ||||||||| ||| || ||| | | Sbjct 1148 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 1207 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | ||| ||||| | ||||| || || || ||||| ||||| || Sbjct 1208 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 1267 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1268 GAAAATCTGCAT 1279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||| | ||| || ||| ||||||||| ||||||||||||| Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || |||||||| || ||||| || | |||||||| || | ||| Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 35630 ACGCTCTCCTTGTCC 35644 | | ||||||||| Sbjct 1401 ATTCCTTCCTTGTCC 1415 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||||||||| || | | ||||| | || || |||||||| || ||||| Sbjct 1952 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2011 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | ||||||||| |||||| || | | | Sbjct 2012 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 2071 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||||| | ||||| ||||| || || | ||| || || Sbjct 2072 CTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 2131 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2132 AAAGATCTGCAT 2143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786500000800