Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq594 111 2e-19 seq563 98.7 1e-15 >seq594 Length=218677 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || |||||| ||| | ||||| || || || | || ||||| || || | ||| Sbjct 188180 CCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTTC 188239 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| || ||||| ||||| || || || |||||||||||||| || || || || Sbjct 188240 TTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAAA 188299 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCT 39817 || | | ||| | ||| | ||| | ||||||||| ||||||||||||| Sbjct 188300 GCGATGACTCTAACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATCAGCC 188359 Query 39818 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 |||||||| | | ||||| || || || || || ||||| Sbjct 188360 TTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAG 188400 >seq563 Length=403863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717 ||||||||||| ||| | || | || |||| | | ||| ||||| || ||||| | Sbjct 150787 GATCTCATCATCCCAGTAATTGATTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAAC 150728 Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777 ||| ||||| || || | || | || ||||| || ||| | || | || || | ||| Sbjct 150727 TTGGAATTCGCCGGACAGAACACGTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGA 150668 Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837 ||||| ||||||| ||| || ||||| || || |||||||| || | |||| | | Sbjct 150667 CTCATTGTTTCCCAAAATCTGGGCAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGA 150608 Query 68838 ATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAG 68896 |||| | ||| ||| | | | ||| ||| | || | ||| ||||||||||||| Sbjct 150607 GTTTCGTACACCGTGTCTGGTAACTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATCAG 150549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/270 (68%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 |||| ||||| ||| || ||| || ||| || ||||||||||| || | | Sbjct 148839 TACCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAG 148780 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT----TCAGAAAGC 70044 ||| || | ||| || | || ||||| ||||| || || | ||| ||| ||| Sbjct 148779 GAGTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAG- 148721 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACG 70103 ||||| || |||| ||| | || || ||| ||| | || || || | | ||||| Sbjct 148720 ---TTGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACG 148665 Query 70104 CATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTT 70163 ||| ||||| |||||||||| ||| | ||| || || ||||||| || |||||| Sbjct 148664 CATTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCG 148605 Query 70164 TTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 ||| ||||| || || || || |||||||| Sbjct 148604 TTCGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897981186400