Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq563 91.5 2e-13 seq594 89.7 6e-13 >seq563 Length=403863 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 ||||||||||| ||||| || || | || || |||| ||||| ||||| || | ||| Sbjct 148807 AGGAAGCAGCTAGACATCTGTGGTCGAGGAGTGCCAGAATTGAAAAGAGTCGGAGAAGCG 148748 Query 119457 TGGATGAACATACCTT-GGGACATCTTGTCGTAGGTCTCCAAGA-CGGCGGGAATGTCTT 119514 ||| | || ||| || | ||| || |||||||| ||||| ||||| |||||| | Sbjct 148747 TGGGT-AAAGTACTTTAAGCTCATGAAGTTGTAGGTCT-CAAGAGCGGCGTCAATGTCCT 148690 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATC 119567 | ||||| ||||| | || || ||||| ||||||| || ||| |||| ||| Sbjct 148689 CACCGTGGATACCAACGGACACACGCATTAACATGTGCTGAGGTCTTTCAATC 148637 >seq594 Length=218677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 ||| ||||| | || || || || || |||||| | || |||||||| || | ||| Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||| | |||||| || || ||| ||||| ||||||||||| || || || ||||| Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 130153 CGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 || | ||| || | | || || | | | | | | | |||||||| ||||| | Sbjct 188299 AGCGA--TGACTCT-AACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATC 188355 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 130270 ||||| |||| |||| ||| | |||| |||||| | |||||| || |||| ||| Sbjct 188356 AGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTTCTCT 188413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425459645600