Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq594 100 3e-16 seq563 82.4 9e-11 >seq594 Length=218677 Score = 100 bits (110), Expect = 3e-16 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 ||||||| | ||||| | || ||| | || | ||| ||| | ||||| || ||| Sbjct 188412 GAGAAGATGGGACTCTTCAACGCGATCGAGACGATGCCGGCTATCAAGAAGAAGGCTGAT 188353 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821 ||||| |||||||| | | | | | ||| | || | | || || |||| || Sbjct 188352 TGGGCACTGAAGTGGATCGGTGCCGATGCGCCCTACTCCGTTA---GAGTCATCGCTTTC 188296 Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || || || || ||||||||||| || ||||| ||| || | |||||||||||| Sbjct 188295 GCCGCCGTCGAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCATCTTCTGGCTCAAGAAG 188236 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||| |||||||| || | |||||||||||||||||| ||| | ||||| || Sbjct 188235 AGAGGCCTCATGCCCGGCGTAACCTTCTCCAACGAGCTTATTTCTAGAGACGAAGG 188180 >seq563 Length=403863 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 |||||||||| ||||| |||||||| ||| | ||||||||| | |||||| | ||| Sbjct 149671 GATCTCTTCTATGCTCTTTGGATTCCTGATTTGTTCATGAAGCGTGTTGAGTCCAACGGC 149730 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGA 104817 ||||| | || || || || || | || || || || ||| ||| | ||| ||||| Sbjct 149731 GATTGGACACTTTTCTGCCCTGATGAAGCTCCCGGACTTCACGAATGCTG-GGGAGAGGA 149789 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 |||||| || |||| ||| || || ||||||| || Sbjct 149790 GTTTGAGGCTCTTTTTGAAAAATATGAAAAAGAAGGCCG 149828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251613642400