Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq594 118 1e-21 >seq594 Length=218677 Score = 118 bits (130), Expect = 1e-21 Identities = 201/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 |||||||| |||| |||| | ||||||| || ||||| | || || |||||||| Sbjct 188466 ATCCACTCGGAGATGTACGCCAAGCTGATCGAGAATCTGGTCCACGACACGAAAGAGAAG 188407 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 || || ||| || || |||||| || || | || | || || || ||||| Sbjct 188406 ATGGGACTCTTCAACGCGATCGAGACGATGCCGGCTATCAAGAAGAAGGCTGATTGGGCA 188347 Query 59946 ATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTC----TCATAGCTTTTGCATG 60001 || ||||||| || | | || | | || ||| |||| ||||| || Sbjct 188346 CTGAAGTGGATCGGTGCCGATGCGCCCT----ACTCCGTTAGAGTCATCGCTTTCGCCGC 188291 Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| ||||||||||| ||||| || || || ||||||||||| ||| | || Sbjct 188290 CGTCGAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCATCTTCTGGCTCAAGAAGAGAGG 188231 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||||||| ||| | | |||||||||||||| ||||| | ||||| || Sbjct 188230 CCTCATGCCCGGCGTAACCTTCTCCAACGAGCTTATTTCTAGAGACGAAGG 188180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516160734400