Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq563 118 1e-21 >seq563 Length=403863 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 |||||| | | || ||||| || || | |||||||||||||| ||| | |||| | Sbjct 148647 CCTCAGCACATGTTAATGCGTGTGTCCGTTGGTATCCACGGTGAGGACATTGACGCCGCT 148706 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 | |||||| ||| |||| |||||| |||||||||||| ||||| | || || || || Sbjct 148707 CT-TGAGACCTACAACTTCATGAGCTTAAAGTACTTTACCCACGCTTCTCCGACTCTTTT 148765 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| |||| || || || |||||||| ||||||||||| || |||||| |||| || Sbjct 148766 CAATTCTGGCACTCCTCGACCACAGATGTCTAGCTGCTTCCTTGTTGCGATGCAGGACGA 148825 Query 53359 CTCGATCGACGG 53370 || || || || Sbjct 148826 TTCTATAGAAGG 148837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207381348000