Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq654 167 3e-36 seq355 161 1e-34 seq532 125 8e-24 seq581 96.9 4e-15 >seq654 Length=87504 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || ||||||||||| ||| | | Sbjct 83095 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCT 83036 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || ||||||||||| || || || ||||||||| Sbjct 83035 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 82976 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || || || | ||||| || Sbjct 82975 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 82916 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || ||||| ||||| ||| | || ||||| || || Sbjct 82915 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGG 82869 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || |||||||| || || || || || ||||||||| | Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || || | ||||| || Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || || ||||| ||||| | ||| | || ||||| || || || Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGGTCA 81546 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 82003 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 81944 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||||||||| || || |||||||| || ||||| ||||||||| Sbjct 81943 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 81884 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| ||| ||| | | ||||| || Sbjct 81883 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 81824 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || ||||| || ||| | || ||||| ||||| Sbjct 81823 ATCCAGAAAGAGTCGACGCTTCACCTCGTCCTCCGACTTCGTGGTGG 81777 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || |||||||| || || || ||||| || | Sbjct 82231 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 82172 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| ||||| ||||||||||| || ||||| ||||||||| Sbjct 82171 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 82112 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || |||| ||| ||| | ||||||| || Sbjct 82111 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 82052 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| | || || || ||||| Sbjct 82051 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGG 82005 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 |||||||||| || || || || |||||||||||||| || || || ||||| ||||| | Sbjct 82670 TTCAGGACAAAGAAGGTATCCCGCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 82611 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 ||||||| | ||||| || | ||||| || |||||||||| |||||||||||||| | Sbjct 82610 TCGAGGACGGGCGTACGCTCTCCGACTACAACATCCAAAAGGAGTCCACTCTTCATCTTG 82551 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 || | |||||||| ||||| Sbjct 82550 TCCTTCGTCTTCGAGGTGG 82532 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || |||||||||| |||||||| |||||||||||||| || || || ||||| ||||| | Sbjct 83235 TTTAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 83176 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 |||| || | || || || | || || || ||||||| || || || || ||||| | Sbjct 83175 TCGAAGACGGCCGAACTCTTTCTGATTACAACATCCAAAAAGAGTCGACGCTCCATCTCG 83116 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 | | || || || ||||| Sbjct 83115 TTCTTCGACTCCGTGGTGG 83097 >seq355 Length=2689 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || ||||| ||||| ||| | | Sbjct 2143 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCT 2084 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || ||||||||||| || || || ||||||||| Sbjct 2083 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 2024 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || || || | ||||| || Sbjct 2023 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 1964 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || ||||| ||||| ||| | || ||||| || || Sbjct 1963 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGG 1917 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 1051 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 992 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||||||||| || || |||||||| || ||||| ||||||||| Sbjct 991 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 932 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| ||| ||| | | ||||| || Sbjct 931 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 872 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| | || || || ||||| Sbjct 871 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGG 825 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || |||||||| || || || ||||| || | Sbjct 1279 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 1220 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| ||||| ||||||||||| || ||||| ||||||||| Sbjct 1219 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 1160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || |||| ||| ||| | ||||||| || Sbjct 1159 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 1100 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| | || || || ||||| Sbjct 1099 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGG 1053 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 535 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || || | ||||| || Sbjct 475 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 416 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| | || || || ||||| Sbjct 415 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGG 369 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 763 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 704 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || || | ||||| || Sbjct 703 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 644 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| | || || || ||||| Sbjct 643 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGG 597 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| || || || | ||||| || Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || || ||||| ||||| | ||| | || ||||| || || || Sbjct 187 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGGTCA 138 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 |||||||||| || || || || |||||||||||||| || || || ||||| ||||| | Sbjct 1718 TTCAGGACAAAGAAGGTATCCCGCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 1659 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 ||||||| | ||||| || | ||||| || |||||||||| |||||||||||||| | Sbjct 1658 TCGAGGACGGGCGTACGCTCTCCGACTACAACATCCAAAAGGAGTCCACTCTTCATCTTG 1599 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 || | |||||||| ||||| Sbjct 1598 TCCTTCGTCTTCGAGGTGG 1580 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || |||||||||| |||||||| |||||||||||||| || || || ||||| ||||| | Sbjct 2283 TTTAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 2224 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 |||| || | || || || | || || || |||| || || || || || ||||| | Sbjct 2223 TCGAAGACGGCCGAACTCTTTCTGATTACAACATCCAGAAAGAGTCGACGCTCCATCTCG 2164 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 | | || || || ||||| Sbjct 2163 TTCTTCGACTCCGTGGTGG 2145 >seq532 Length=2515153 Score = 125 bits (138), Expect = 8e-24 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || |||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | Sbjct 2299572 TTTAGGACAAGGAAGGAATCCCTCCAGACCAGCAGCGACTCATCTTCGCTGGTAAGCAGC 2299513 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 ||||||||| || || || | ||||| || |||| ||||| |||||||| ||| | | Sbjct 2299512 TCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATTTGG 2299453 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 || | || || || ||||| Sbjct 2299452 TCCTCCGACTCCGAGGTGG 2299434 >seq581 Length=283842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/275 (69%), Gaps = 12/275 (4%) Strand=Plus/Plus Query 31981 GCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAG---AAGAAC 32037 |||||||| ||||| || ||||| || || ||| | ||| ||||| ||| || Sbjct 277171 GCGGACGGTCTCAAACCGGGTCAGCGAAAAGTTTTATGGACGTGCTTCAAGCGCAAGGAC 277230 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTAT 32097 ||||| | | || || ||||| || || || | ||| | || | |||||| Sbjct 277231 AAGTCGAAGG---TAAAAGTCGCGCAACTTTCCGGTTCCGTTTCCGAAATGTCCGCCTAT 277287 Query 32098 CACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGT 32157 ||||||||||| | |||||| || || ||| |||| || || ||||||| ||||| Sbjct 277288 CACCACGGCGAAGTCTCGCTCATGGATACGATTATCAAACTGGCGCAGAACTACGTCGGC 277347 Query 32158 GCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGC 32217 ||||| || ||||| | ||||| || | || ||||| || | |||| | ||| ||| Sbjct 277348 GCAAACAATGTGAACCTGCTCGAACCGTTCGGCCAGTTCGGTTCTCGGCGTGTCGGAGGC 277407 Query 32218 AAGGAT---GCTGCGAGCTCCCGTTACATCTTCAC 32249 || ||| ||||| ||| ||||| || ||||| Sbjct 277408 AAAGATCACGCTGC-TGCT--CGTTATATTTTCAC 277439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301417611200