Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq654 105 4e-18 seq355 105 4e-18 seq532 89.7 3e-13 >seq654 Length=87504 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||| || | || | ||||||||| ||| ||||||||||| || || || Sbjct 82868 GCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGA 82927 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| | || ||||| || || |||||||| || | ||||| ||||| ||||| Sbjct 82928 AAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGG 82987 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||| || | ||| || | || ||||| ||| | Sbjct 82988 GATACCTTCCTTGTCCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA 83046 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || ||||| ||||| | || || ||||| ||||||||| Sbjct 83047 CCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 83096 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | ||||| || || ||| ||| || || ||||| || || ||| Sbjct 81549 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 81608 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | |||||||| || || ||||| || || | ||||| ||||| || || Sbjct 81609 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 81668 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || ||| | ||| ||||| ||| || Sbjct 81669 ATGCCTTCTTTGTCTTGGAT-TTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAAC 81727 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||||||||| | ||||| || || |||||||| Sbjct 81728 CTCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||||||| | ||| | ||| ||||||||| ||||| ||||| || Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||| || || || ||||| || | ||||| || || || || Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 34600 ACTCCCTCCTTGTC 34613 | ||| |||||||| Sbjct 82353 ATTCCTTCCTTGTC 82366 >seq355 Length=2689 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||| || | || | ||||||||| ||| ||||||||||| || || || Sbjct 1916 GCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGA 1975 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| | || ||||| || || |||||||| || | ||||| ||||| ||||| Sbjct 1976 AAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGG 2035 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||| || | ||| || | || ||||| ||| | Sbjct 2036 GATACCTTCCTTGTCCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA 2094 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || ||||| ||||| | || || ||||| ||||||||| Sbjct 2095 CCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 2144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||||||| | ||| | ||| ||||||||| ||||| ||||| || Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||| || || || ||||| || | ||||| || || || || Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 34600 ACTCCCTCCTTGTC 34613 | ||| |||||||| Sbjct 1401 ATTCCTTCCTTGTC 1414 >seq532 Length=2515153 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || | ||||||||||||||| |||||| || ||||| || || ||| Sbjct 2299434 CCACCTCGGAGTCGGAGGACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2299493 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || || || ||||| || || || | ||||| ||||| || || Sbjct 2299494 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGG 2299553 Query 34600 ACTCCCTCCTTGTC 34613 | ||| |||||||| Sbjct 2299554 ATTCCTTCCTTGTC 2299567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724766933580