Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq355 125 6e-24 seq654 116 3e-21 >seq355 Length=2689 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | ||||||||| | || || |||||||| ||| | || Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||||||||||||||| ||||| || || Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | ||||| | || |||| || |||||| Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || ||||| ||| | || ||||| Sbjct 187 ATCCAGAAAGAGTCCACCCTTCACTTGGT 159 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | ||||||||| | || || |||||||| ||| | || Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||||||||||||||| ||||| || || Sbjct 535 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 476 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | ||||| | || |||| || |||||| Sbjct 475 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 416 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | || | || ||||| || Sbjct 415 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGTAT 366 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | ||||||||| | || || |||||||| ||| | || Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||||||||||||||| ||||| || || Sbjct 763 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 704 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | ||||| | || |||| || |||||| Sbjct 703 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 644 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | || | || ||||| || Sbjct 643 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGTAT 594 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| |||||||| | || ||||| || || || | || Sbjct 2144 CATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTC 2085 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| || || || ||||| ||||| || || || || || Sbjct 2084 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCA 2025 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || || | || |||| || ||||| Sbjct 2024 GCAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAA 1965 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||| || | ||| | || | || | || || ||||| Sbjct 1964 CATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGGCAT 1914 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27081 GACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 ||||| ||||| || || || ||||| ||||| | || | || ||||| || | ||| Sbjct 1414 GACAAGGAAGGAATTCCCCCAGATCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTTGAA 1355 Query 27141 GACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || ||| | |||||||||||||| ||||||||||| || || ||| | || ||| Sbjct 1354 GATGGTCGAACCCTCTCCGATTACAACATCCAAAAGGAGTCTACTTTGCATCTTGTGTTG 1295 Query 27201 CGTTTGCGGGGTGGCAT 27217 ||| | || ||||| || Sbjct 1294 CGTCTCCGAGGTGGTAT 1278 >seq654 Length=87504 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| || | || || || || || || | ||| Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| ||||||||||||||||| ||||| || || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | ||||| | || |||| || |||||| Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || ||||| ||| | || ||||| Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGT 81567 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| |||||||| | || |||||||| || || | || Sbjct 83096 CATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTC 83037 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| || || || ||||| ||||| || || || || || Sbjct 83036 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCA 82977 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || || | || |||| || ||||| Sbjct 82976 GCAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAA 82917 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||| || | ||| | || | || | || || ||||| Sbjct 82916 CATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGGCAT 82866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27081 GACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 ||||| ||||| || || || ||||| ||||| | || | || ||||| || | ||| Sbjct 82366 GACAAGGAAGGAATTCCCCCAGATCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTTGAA 82307 Query 27141 GACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || ||| | |||||||||||||| ||||||||||| || || ||| | || ||| Sbjct 82306 GATGGTCGAACCCTCTCCGATTACAACATCCAAAAGGAGTCTACTTTGCATCTTGTGTTG 82247 Query 27201 CGTTTGCGGGGTGGCAT 27217 ||| | || ||||| || Sbjct 82246 CGTCTCCGAGGTGGTAT 82230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911550035200