Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq530 86.0 5e-12 >seq530 Length=3167015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||||||||| ||||| || |||||| || | |||||||||||| || |||||| Sbjct 2104256 TGAGCAATCATTATTGTCATCAGCGCGTAGCTCGCAATATTAAAAGGAACTCCGAGACCC 2104197 Query 118606 ATGT--CTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACT 118663 |||| | ||| | |||||| | || || ||||||| |||||||| |||||||| | Sbjct 2104196 ATGTCACAACTG--CGCTGGTAGAGCTGACAGGAGAGCTTTCCGTTTGCGACATAAAATT 2104139 Query 118664 GAC 118666 ||| Sbjct 2104138 GAC 2104136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414470435190640