Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq654 122 6e-23 seq355 113 3e-20 >seq654 Length=87504 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || ||||| ||||| ||||| ||||| | | Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || ||||| | |||||| | || |||||| Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 81595 ATCCAGAAAGAGTCCAC 81579 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||| | || || || || ||||| ||||| || || || | Sbjct 82231 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 82172 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || ||||| ||||| |||||| | || ||||| || Sbjct 82171 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 82112 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || ||||| | ||||| || || |||||| Sbjct 82111 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 82052 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 82051 ATCCAGAAAGAGTCGAC 82035 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| |||||||| || || || | | Sbjct 83095 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCT 83036 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| |||||| | |||||||| || Sbjct 83035 GACACCATCGAGAATGTCAAAGCCAAGA-TCCAGGACAAGGAAGGTATCCCGCCAGACCA 82977 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || || | || ||| | || ||||| Sbjct 82976 GCAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAA 82917 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 82916 CATTCAAAAAGAGTCTAC 82899 >seq355 Length=2689 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || |||||||| || |||||||| || || Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||||||||| | || ||||| || Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || ||||| | |||||| | || |||||| Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 187 ATCCAGAAAGAGTCCAC 171 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || |||||||| || |||||||| || || Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||||||||| | || ||||| || Sbjct 535 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 476 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || ||||| | |||||| | || |||||| Sbjct 475 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 416 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 415 ATCCAGAAAGAGTCGAC 399 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || |||||||| || |||||||| || || Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||||||||| | || ||||| || Sbjct 763 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 704 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || ||||| | |||||| | || |||||| Sbjct 703 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 644 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 643 ATCCAGAAAGAGTCGAC 627 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||| | || || || || ||||| ||||| || || || | Sbjct 1279 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 1220 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || ||||| ||||| |||||| | || ||||| || Sbjct 1219 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 1160 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || ||||| | ||||| || || |||||| Sbjct 1159 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 1100 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 1099 ATCCAGAAAGAGTCGAC 1083 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| ||||||||||| || || | | Sbjct 2143 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCT 2084 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| |||||| | |||||||| || Sbjct 2083 GACACCATCGAGAATGTCAAAGCCAAGA-TCCAGGACAAGGAAGGTATCCCGCCAGACCA 2025 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || || | || ||| | || ||||| Sbjct 2024 GCAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAA 1965 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 1964 CATTCAAAAAGAGTCTAC 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004409440080