Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq563 127 3e-24 seq594 104 3e-17 >seq563 Length=403863 Score = 127 bits (140), Expect = 3e-24 Identities = 192/270 (71%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 |||| |||||| || ||| ||| || ||| || ||||||||||| || | || Sbjct 148839 TACCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAG 148780 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT----TCAGAAAGT 78452 ||| || | ||| || | |||||||| || || ||||| | ||| ||| |||| Sbjct 148779 GAGTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGT 148720 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACG 78511 |||| || |||| ||| | || |||||| || | || || || || | ||||| Sbjct 148719 ----TGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACG 148665 Query 78512 CATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTT 78571 ||| ||||| |||||||||||||||| |||||| || ||||||| ||| |||||| Sbjct 148664 CATTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCG 148605 Query 78572 TTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| | ||| || ||||| || |||||||| Sbjct 148604 TTCGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 105 bits (116), Expect = 9e-18 Identities = 382/600 (64%), Gaps = 47/600 (8%) Strand=Plus/Minus Query 76772 CTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACC 76831 |||||| | |||||| | || | | | || || ||||| || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 76832 AGTTTTTAGACCCAGACTCCATCC-GTAGAAATGCATGCTTGTCAGTTTGGAATAACTAG 76890 |||||| | |||| |||| || ||| || ||||| || ||| | ||| | | Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTA-AAGTGCATAGACGTGAGTGTTCCATACTTCG 151006 Query 76891 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950 | | || | ||| ||||| | ||||| || |||||||| | ||| | ||| || | Sbjct 151005 GTTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAG 150946 Query 76951 CCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 |||||| | || | | || || |||||||||| |||| || | || |||||| | Sbjct 150945 CCATTTGAAGAACGTTTTTCTGCTTGATTTCCCAAACAGTTCTGTACCGTTCTTTGATGT 150886 Query 77011 CATCTGG-------AAGGTTTG--------------TA----TTT--------------- 77030 || |||| ||| | || || ||| Sbjct 150885 CAGCTGGGATATCCAAGTTCTGATTATCTCGATTAATAAGAGTTTAAGAGCGCAATCATC 150826 Query 77031 ---TGAATGGAACCACCATCTGATATAAT-TGTATTCTTTATATCATCATTCCACAATTT 77086 |||||||||||| |||| | || ||| || || ||||||| ||| | || Sbjct 150825 ACCTGAATGGAACCATTATCTTGCACGATCTGTTGTCGG-ATCTCATCATCCCAGTAATT 150767 Query 77087 CCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATAC 77146 | || |||| | | ||| ||||| || ||||| | ||| ||||| || |||| || Sbjct 150766 GATTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAAC 150707 Query 77147 TCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTG 77206 | || ||||| || ||| | || | || || | ||| ||||||||||||||||| || Sbjct 150706 ACGTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTG 150647 Query 77207 AGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCT 77266 ||||| || || |||||||| || | |||| | | |||| | ||| ||| | | Sbjct 150646 GGCAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGT 150587 Query 77267 GATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATC 77326 | ||| ||| | || | ||| ||||||||||| | || |||| |||| || || Sbjct 150586 AACTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATCAGTGGGAGTAACACCCCACAGGTC 150527 >seq594 Length=218677 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 |||||| |||||| ||| | ||||| || || || | |||||||| || || | || Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 |||||||| || || || || || || || || ||||| |||||||| ||||| || || Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 ||| | | ||| | ||| || ||| |||||| ||||||||||||| Sbjct 188299 AGCGATGACTCTAACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATCAGC 188358 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 ||||||||| | | ||||| || || || || || ||||| Sbjct 188359 CTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAG 188400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657858966400