Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq563 120 4e-22 seq594 102 1e-16 >seq563 Length=403863 Score = 120 bits (132), Expect = 4e-22 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 ||||||||||| ||| | || | ||||||| | | ||| ||||| || ||||||| Sbjct 150787 GATCTCATCATCCCAGTAATTGATTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAAC 150728 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| ||||| || |||| || | ||| ||||| || ||| | || | || || | ||| Sbjct 150727 TTGGAATTCGCCGGACAGAACACGTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGA 150668 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||||||||||| || ||||| || || || ||||| || | |||| | | Sbjct 150667 CTCATTGTTTCCCAAAATCTGGGCAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGA 150608 Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 |||| | ||| ||| | | | ||| ||| | || | ||| ||||||||||| | Sbjct 150607 GTTTCGTACACCGTGTCTGGTAACTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATCAGT 150548 Query 75901 TGGTACAACATCCCAGAGATC 75921 || |||| |||| || || Sbjct 150547 GGGAGTAACACCCCACAGGTC 150527 Score = 100 bits (110), Expect = 4e-16 Identities = 185/268 (69%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 76934 cccTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 || |||||| ||| ||| ||| || ||| || ||||||||||| || | || | Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT----TCAGAAAGTAG 77049 || || | ||| || | || ||||| || || || || | ||| ||| ||| Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAG--- 148721 Query 77050 ATTGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCA 77108 ||||| || |||| | | || || || ||| || | || || || || | ||||||| Sbjct 148720 -TTGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCA 148663 Query 77109 TCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTT 77168 | ||||| |||||||||| ||| | ||||| || ||||||| ||| |||||| || Sbjct 148662 TTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTT 148603 Query 77169 CCAAAGTTTTAAAACCAAAATAGTTGTA 77196 | | ||| || ||||| || |||||||| Sbjct 148602 CGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCC-GTAGAA 75456 || || ||||| || ||||||||||| |||||||| | |||| |||| || ||| || Sbjct 151093 GCCGGCTTTGTGCGAAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCAGTA-AA 151035 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 ||||| || ||| | ||| |||| | || | ||| ||||| | ||||| Sbjct 151034 GTGCATAGACGTGAGTGTTCCATACTTCGGTTGTGCGACATGGATATTAAGAGACTGGGA 150975 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576 || |||||||| | ||| | ||| || ||||||| | || | | || || ||||| Sbjct 150974 CTGGTCGATGAATGGTCCACGATCGGCAGCCATTTGAAGAACGTTTTTCTGCTTGATTTC 150915 Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 ||||| |||| || | || |||||| ||| |||| Sbjct 150914 CCAAACAGTTCTGTACCGTTCTTTGATGTCAGCTGG 150879 >seq594 Length=218677 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 ||||| |||||| ||| | ||||| || || || | || ||||| || || | ||| Sbjct 188180 CCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTTC 188239 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 |||||||| || || || || || || || || ||||| |||||||| || || ||||| Sbjct 188240 TTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAAA 188299 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| | ||| | ||| ||||| | |||||| | | |||||||||||| Sbjct 188300 GCGATGACTCTAACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATCAGCC 188359 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 || ||||| | | ||||| || || || || || ||||| Sbjct 188360 TTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAG 188400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923171283200