Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq654 178 3e-39 seq355 172 1e-37 seq532 96.9 8e-15 >seq654 Length=87504 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||| ||||| ||||||||||||||||| |||||||| || | | ||||| Sbjct 82878 AGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGG 82937 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || ||||| ||||| || | ||||||||| | || ||| |||||| Sbjct 82938 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCC 82997 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||||| |||| | | |||| ||| ||| || |||||||| Sbjct 82998 TTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTG 83057 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||||||||| || |||| |||||| Sbjct 83058 ATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||| || ||||| || |||||||| ||||||||||| |||| || || | Sbjct 81786 AGTCGGAGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGA 81845 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || ||||||||||| || | ||||||||| | | || |||||| Sbjct 81846 CCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCC 81905 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || || | || | |||| || || |||||||| || Sbjct 81906 TTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTG 81965 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| ||||||| |||||| Sbjct 81966 ATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | ||||| || |||||||| ||||||||||| || | | ||| | | Sbjct 81558 AGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGC 81617 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || |||||||||||||| | ||||||||| | | || ||||| Sbjct 81618 CCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCT 81677 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| || || | || | | |||| ||| ||| || || || || Sbjct 81678 TTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTG 81737 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || ||||||| |||||| Sbjct 81738 ATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| |||||||| || |||||||| ||||||||||| || | || || | Sbjct 82013 GAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCG 82072 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || |||||||| || | ||||||||| | | || ||||| Sbjct 82073 ACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTC 82132 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| ||||| | || | |||| || || || || || || Sbjct 82133 CTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGT 82192 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | || || ||||| | |||||| Sbjct 82193 GATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||||||||| ||||| |||||||||||||| |||| | || | ||| || Sbjct 82547 AGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCC 82606 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | || ||| ||||| || || Sbjct 82607 TCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 82666 Query 152013 TGAA 152016 |||| Sbjct 82667 TGAA 82670 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| || || ||||||||||||||||||||||| | | ||||| Sbjct 83105 GAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCG 83164 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || ||||||||||| | ||||||||| | | |||||||| Sbjct 83165 GCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTC 83224 Query 152006 CTTTTC 152011 ||| || Sbjct 83225 CTTGTC 83230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | ||||||||| ||||||||||||||||||| | |||| |||||||| Sbjct 82251 ACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGGGTTCGACCATCTTCA 82310 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || | |||||| || | | ||||||||||| || Sbjct 82311 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTC 82366 >seq355 Length=2689 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||| ||||| ||||||||||||||||| |||||||| || | | ||||| Sbjct 1926 AGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGG 1985 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || ||||| ||||| || | ||||||||| | || ||| |||||| Sbjct 1986 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCC 2045 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||||| |||| | | |||| ||| ||| || || ||||| Sbjct 2046 TTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTG 2105 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||||||||| || |||| |||||| Sbjct 2106 ATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| |||||||| || |||||||| ||||||||||| || | | ||| | Sbjct 377 GAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCG 436 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||||| || || |||||||||||||| | ||||||||| | | || ||||| Sbjct 437 CCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTC 496 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| ||||| || || | || | |||| || || |||||||| || Sbjct 497 TTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGT 556 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| ||||||| |||||| Sbjct 557 GATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| |||||||| || |||||||| ||||||||||| || | | ||| | Sbjct 605 GAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCG 664 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||||| || || |||||||||||||| | ||||||||| | | || ||||| Sbjct 665 CCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTC 724 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| ||||| || || | || | |||| || || |||||||| || Sbjct 725 TTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGT 784 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| ||||||| |||||| Sbjct 785 GATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| |||||||| || |||||||| ||||||||||| |||| || || | Sbjct 833 GAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCG 892 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || ||||||||||| || | ||||||||| | | || ||||| Sbjct 893 ACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTC 952 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || || | || | |||| || || |||||||| || Sbjct 953 CTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGT 1012 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| ||||||| |||||| Sbjct 1013 GATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | ||||| || |||||||| ||||||||||| || | | ||| | | Sbjct 150 AGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGC 209 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || |||||||||||||| | ||||||||| | | || ||||| Sbjct 210 CCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCT 269 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| || || | || | |||| || || |||||||| || Sbjct 270 TTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTG 329 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| ||||||| |||||| Sbjct 330 ATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| |||||||| || |||||||| ||||||||||| || | || || | Sbjct 1061 GAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCG 1120 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || |||||||| || | ||||||||| | | || ||||| Sbjct 1121 ACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTC 1180 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| ||||| | || | |||| || || || || || || Sbjct 1181 CTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGT 1240 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | || || ||||| | |||||| Sbjct 1241 GATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||||||||| ||||| |||||||||||||| |||| | || | ||| || Sbjct 1595 AGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCC 1654 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | || ||| ||||| || || Sbjct 1655 TCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 1714 Query 152013 TGAA 152016 |||| Sbjct 1715 TGAA 1718 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| || || |||||||| |||||||||||||| | | ||||| Sbjct 2153 GAGTCGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTTCG 2212 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || ||||||||||| | ||||||||| | | |||||||| Sbjct 2213 GCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTC 2272 Query 152006 CTTTTC 152011 ||| || Sbjct 2273 CTTGTC 2278 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | ||||||||| ||||||||||||||||||| | |||| |||||||| Sbjct 1299 ACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGGGTTCGACCATCTTCA 1358 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || | |||||| || | | ||||||||||| || Sbjct 1359 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTC 1414 >seq532 Length=2515153 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||| ||||| ||||| || ||||||||||| |||| | ||||| Sbjct 2299442 GAGTCGGAGGACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 2299501 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | ||||||||| | | ||||||||| Sbjct 2299502 GCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCTTC 2299561 Query 152006 CTTTTC 152011 ||| || Sbjct 2299562 CTTGTC 2299567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153802173005460