Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq654 120 2e-22 seq355 114 9e-21 >seq654 Length=87504 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || ||||||||||| ||| || ||||||||||| |||| | || | ||| | || || Sbjct 81795 ACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGT-GCGACCATCTTC 81853 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | |||||||| |||| || | ||||||||| || Sbjct 81854 AAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTG 81913 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || ||| || || | ||| |||||||| Sbjct 81914 GATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTT 81973 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 81974 GCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||| || ||||||||||| || | || |||| | || || Sbjct 81567 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 81626 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| |||| || | ||||| || || Sbjct 81627 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 81686 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || | |||||||||| | || ||||| | || || || || Sbjct 81687 ATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTA 81746 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || |||||||| ||||| Sbjct 81747 CCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 || || |||||||| ||| || ||||||||||| || | | || | ||| | || || Sbjct 82023 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGT-GCGACCATCTTC 82081 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||| |||| || | ||||||||| ||| Sbjct 82082 AAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 82141 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||| | || | || ||||||| || ||| ||||| | || || ||||| Sbjct 82142 GATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTT 82201 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || ||||| || ||||| Sbjct 82202 GCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 105 bits (116), Expect = 5e-18 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| | || || || || || ||| ||||| |||||||| || Sbjct 82865 CATGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTC 82924 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | || | || || |||||||| ||||||||||| | |||||||| ||| Sbjct 82925 AGAAAGAGTTCG-GC-CATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCT 82982 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | ||||||||| ||| ||||| |||| | ||| | |||||||| | | Sbjct 82983 GGCGGGATACCTTCCTTGTCCTGGATCTT-GGCTTTGACATTCTCGATGGTGTCAGAAGC 83041 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || || || || ||||| ||||| || ||||| |||||| Sbjct 83042 CTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 83096 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | |||||| || || | || ||||||||||||||||||||| Sbjct 82229 CATACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATC 82288 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || |||||||| || |||||||| | ||||||||||||| Sbjct 82289 GGAGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGG 82348 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | |||||||| ||| Sbjct 82349 GGGAATTCCTTCCTTGTCC 82367 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||||||||||||||| |||| ||| ||| |||| || Sbjct 82550 ACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCG 82609 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||||||| || || ||||| | |||||||| |||| || | |||||| || ||| Sbjct 82610 AGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 82666 >seq355 Length=2689 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || |||||||| ||| || ||||||||||| |||| | || | ||| | || || Sbjct 843 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGT-GCGACCATCTTC 901 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | |||||||| |||| || | ||||||||| || Sbjct 902 AAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTG 961 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || ||| || || | ||| |||||||| Sbjct 962 GATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTT 1021 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 1022 GCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||| || ||||||||||| || | || |||| | || || Sbjct 159 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 218 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| |||| || | ||||| || || Sbjct 219 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 278 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| | | || ||||| | || ||| || || | ||| |||||||| Sbjct 279 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 338 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 339 CCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 || || |||||||| ||| || ||||||||||| || | | || | ||| | || || Sbjct 1071 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGT-GCGACCATCTTC 1129 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||| |||| || | ||||||||| ||| Sbjct 1130 AAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 1189 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||| | || | || ||||||| || ||| ||||| | || || ||||| Sbjct 1190 GATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTT 1249 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || ||||| || ||||| Sbjct 1250 GCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 105 bits (116), Expect = 5e-18 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| | || || || || || ||| ||||| |||||||| || Sbjct 1913 CATGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTC 1972 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | || | || || |||||||| ||||||||||| | |||||||| ||| Sbjct 1973 AGAAAGAGTTCG-GC-CATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCT 2030 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | ||||||||| ||| ||||| |||| | ||| | |||||||| | | Sbjct 2031 GGCGGGATACCTTCCTTGTCCTGGATCTT-GGCTTTGACATTCTCGATGGTGTCAGAAGC 2089 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || || || || ||||| ||||| || ||||| |||||| Sbjct 2090 CTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 2144 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || |||||||| ||| || ||||||||||| || | || |||| | || || Sbjct 387 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 446 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| |||| || | ||||| || || Sbjct 447 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 506 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| | | || ||||| | || ||| || || | ||| |||||||| Sbjct 507 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 566 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 567 CCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || |||||||| ||| || ||||||||||| || | || |||| | || || Sbjct 615 ACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 674 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| |||| || | ||||| || || Sbjct 675 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 734 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| | | || ||||| | || ||| || || | ||| |||||||| Sbjct 735 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 794 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 795 CCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | |||||| || || | || ||||||||||||||||||||| Sbjct 1277 CATACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATC 1336 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || |||||||| || |||||||| | ||||||||||||| Sbjct 1337 GGAGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGG 1396 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | |||||||| ||| Sbjct 1397 GGGAATTCCTTCCTTGTCC 1415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||||||||||||||| |||| ||| ||| |||| || Sbjct 1598 ACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCG 1657 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||||||| || || ||||| | |||||||| |||| || | |||||| || ||| Sbjct 1658 AGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 1714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984871897420