Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq355 168 2e-36 seq654 165 2e-35 seq532 111 4e-19 seq534 109 1e-18 >seq355 Length=2689 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || ||||| ||||| |||||||| || || ||| Sbjct 2140 CAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCTGAC 2081 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 2080 ACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAGCAG 2021 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||||| || ||||| | |||||| | || || ||| | Sbjct 2020 CGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAACATT 1961 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || || ||||| || Sbjct 1960 CAAAAAGAGTCTACTCTCCATCTCGT 1935 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || |||||||| || || || ||| ||| ||| Sbjct 592 CAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCGGAC 533 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || ||||||||||| || || || |||||||| Sbjct 532 ACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAGCAG 473 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || ||||| |||||||| | |||||| | || || ||| || Sbjct 472 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAACATC 413 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 412 CAGAAAGAGTCGACGCTTCATCTCGT 387 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || |||||||| || || || ||| ||| ||| Sbjct 820 CAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCGGAC 761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || ||||||||||| || || || |||||||| Sbjct 760 ACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAGCAG 701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || ||||| |||||||| | |||||| | || || ||| || Sbjct 700 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAACATC 641 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 640 CAGAAAGAGTCGACGCTTCATCTCGT 615 Score = 154 bits (170), Expect = 4e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || || || |||||||||||||| ||| ||| ||| Sbjct 1276 CAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCCGAC 1217 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 1216 ACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAGCAG 1157 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| |||||||| || || ||||| |||||||| | || |||| | || || ||| | Sbjct 1156 CGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCAC-CTTGTCAGACTACAACAT 1098 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || || || ||||| || Sbjct 1097 CCAGAAAGAGTCGACGCTTCATCTCGT 1071 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || |||||||| || || || ||| ||| ||| Sbjct 364 CAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCGGAC 305 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || ||||||||||| || || || |||||||| Sbjct 304 ACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAGCAG 245 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || ||||| |||||||| | |||||| | || || ||| || Sbjct 244 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAACATC 185 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 184 CAGAAAGAGTCCACCCTTCA-CTTG 161 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || |||||||| || || || ||| ||| ||| Sbjct 1048 CAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCGGAC 989 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct 988 ACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAG 929 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| ||||||||||| || ||||| |||||||| | || |||| |||| || ||| | Sbjct 928 CGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 870 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || || || ||||| || Sbjct 869 CCAGAAAGAGTCGACGCTTCATCTCGT 843 Score = 120 bits (132), Expect = 7e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 || ||||||| |||||||| || || |||||||| |||||||||||||| || || |||| Sbjct 2283 TTTAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 2224 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || | |||||| | ||||| ||| |||| ||||| || || || ||||| | Sbjct 2223 TCGAAGACGGCCGAACTCTTTCTGATTACAACATCCAGAAAGAGTCGACGCTCCATCTCG 2164 Query 178129 TTTTGAGACTC 178139 || | ||||| Sbjct 2163 TTCTTCGACTC 2153 Score = 114 bits (126), Expect = 3e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 |||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||| Sbjct 1718 TTCAGGACAAAGAAGGTATCCCGCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 1659 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || | || || |||| || ||| ||||||| || || || || ||||||| Sbjct 1658 TCGAGGACGGGCGTACGCTCTCCGACTACAACATCCAAAAGGAGTCCACTCTTCATCTTG 1599 Query 178129 T 178129 | Sbjct 1598 T 1598 >seq654 Length=87504 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || ||||| ||||| || ||||| || || ||| Sbjct 83092 CAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCTGAC 83033 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 83032 ACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAGCAG 82973 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||||| || ||||| | |||||| | || || ||| | Sbjct 82972 CGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAACATT 82913 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || || ||||| || Sbjct 82912 CAAAAAGAGTCTACTCTCCATCTCGT 82887 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 81772 CAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCCGAC 81713 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || || || || ||||||||||| || || || |||||||| Sbjct 81712 ACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAGCAG 81653 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || ||||| |||||||| | |||||| | || || ||| || Sbjct 81652 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAACATC 81593 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 81592 CAGAAAGAGTCCACCCTTCA-CTTG 81569 Score = 154 bits (170), Expect = 4e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || || || |||||||||||||| ||| ||| ||| Sbjct 82228 CAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCCGAC 82169 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 82168 ACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAGCAG 82109 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| |||||||| || || ||||| |||||||| | || |||| | || || ||| | Sbjct 82108 CGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCAC-CTTGTCAGACTACAACAT 82050 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || || || ||||| || Sbjct 82049 CCAGAAAGAGTCGACGCTTCATCTCGT 82023 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || |||||||| || || || ||| ||| ||| Sbjct 82000 CAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCGGAC 81941 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct 81940 ACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAG 81881 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| ||||||||||| || ||||| |||||||| | || |||| |||| || ||| | Sbjct 81880 CGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 81822 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || || || || || || Sbjct 81821 CCAGAAAGAGTCGACGCTTCACCTCGT 81795 Score = 123 bits (136), Expect = 6e-23 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 || ||||||| |||||||| || || |||||||| |||||||||||||| || || |||| Sbjct 83235 TTTAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 83176 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || | |||||| | ||||| ||| |||||||||| || || || ||||| | Sbjct 83175 TCGAAGACGGCCGAACTCTTTCTGATTACAACATCCAAAAAGAGTCGACGCTCCATCTCG 83116 Query 178129 TTTTGAGACTC 178139 || | ||||| Sbjct 83115 TTCTTCGACTC 83105 Score = 114 bits (126), Expect = 3e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 |||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||| Sbjct 82670 TTCAGGACAAAGAAGGTATCCCGCCAGACCAGCAGCGACTTATCTTCGCTGGCAAGCAGC 82611 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || | || || |||| || ||| ||||||| || || || || ||||||| Sbjct 82610 TCGAGGACGGGCGTACGCTCTCCGACTACAACATCCAAAAGGAGTCCACTCTTCATCTTG 82551 Query 178129 T 178129 | Sbjct 82550 T 82550 >seq532 Length=2515153 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 || ||||||| |||||||||||||| |||||||| ||||| |||||||| || || |||| Sbjct 2299572 TTTAGGACAAGGAAGGAATCCCTCCAGACCAGCAGCGACTCATCTTCGCTGGTAAGCAGC 2299513 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| | |||||| |||| || ||| |||| || || || || || ||| | | Sbjct 2299512 TCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATTTGG 2299453 Query 178129 TTTTGAGACTCAGA 178142 | | ||||| || Sbjct 2299452 TCCTCCGACTCCGA 2299439 >seq534 Length=1792778 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||| || ||| Sbjct 1550383 CAGATCTTCGTTAAAACCCTCACGGGAAAAACGATCACCCTTGAGGTCGAAGCTTCTGAC 1550442 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||||||||||| |||||| ||||| |||||||| || ||||| || || Sbjct 1550443 ACCATCGAGAATGTCAAAGCTAAGATCCAGGACAAGGAGGGAATTCCCCC 1550492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711767264440