Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq982775 179 1e-40 >seq982775 Length=28252 Score = 179 bits (198), Expect = 1e-40 Identities = 445/668 (67%), Gaps = 18/668 (3%) Strand=Plus/Minus Query 639 CCGGAACCCATGACAGCTGTCGAATGGGCCGATGCGCATTATTACCTTCCGAAAGAATCC 698 |||||||| | ||||| ||| ||||| || | | ||| ||| ||| | | ||||| Sbjct 2198 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 2139 Query 699 GCTTATCAGGAGGGTCGCTGGGAAACACTGCCATTTCAGCGCGCGATCATGAATGCGATG 758 | ||||| || ||||| ||| |||| |||| || || |||||| | || || ||| Sbjct 2138 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 2079 Query 759 GGCAGTGACTATATTCGCATTGTTAACGTCATTAAGTCGGCGCGAGTAGGCTATTCGAAA 818 ||| || || || |||| ||||| | |||||||| ||| | || || | || Sbjct 2078 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 2019 Query 819 ATGCTCCTCGGCGTCATTGCTTATTTCATCGAGCACAAACAGCGTAATGAGTTGCTGTGG 878 |||||||||| | ||||| || | | | |||||||| | || || | | |||| | Sbjct 2018 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 1962 Query 879 CT---GCCGACCGACGGCGACGCAGATAA--TTTCATGAAGTCACACGTTGAACCGACGA 933 | ||||||||| |||||| || || ||||| || |||| ||||| | | | Sbjct 1961 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCAC--GTTGATACAGCAA 1904 Query 934 TTCGTGATGTCCCTTCTCTGTTATCACTTGCACCCTGGTACGGGAAAAAGCACAGGGACA 993 |||||||||| || | ||| ||||| || |||| ||| | |||||| | || | Sbjct 1903 TTCGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATA 1844 Query 994 ATACCCTGTCGAT--GAAGCGTTTTACCAATGGCCGTGGATTTTGGTGCCTGGGCGGTAA 1051 || | | ||| |||||| || | || ||| ||| | | |||||||| Sbjct 1843 --ACACGTTAGATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAA 1786 Query 1052 GGCTGCAAAAAACTATCGTGAAAAATCAGTAGATGTAGTTGGTTACGATGAACTGGCGGC 1111 ||| || | ||||| ||||||| || | ||||| || | ||| || || || || || Sbjct 1785 GGCGGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGC 1726 Query 1112 GTTTGACGCAGACATTGAGAAAGAGGGTTCGCCGACCTTCCTGGGGGATAAGCGTATCGA 1171 || || || ||||| ||||| || ||||||||| || || ||||||||| | || Sbjct 1725 ATTCGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGA 1666 Query 1172 GGGCTC--TGTTTGGCCCAAATCCATACGCGGTTCGACACCGAAATTGCGTGGAACGTGT 1229 || || || || || || ||||| ||||| ||||| ||| | || || || Sbjct 1665 AGGTTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGC 1608 Query 1230 CAGATTGAGCGAGCAGCAAAAGAGTCCGGGCATTTTATGCGATTTCATGTCGCATGCCCG 1289 |||||||| || || | ||||||| | | | | |||||| ||| | |||||| Sbjct 1607 CAGATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCG 1548 Query 1290 CATTGTGG 1297 || || || Sbjct 1547 CACTGCGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141291025244708