Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq456579 212 6e-50 seq805419 154 1e-32 seq3878943 104 2e-17 seq3695667 102 8e-17 seq3830724 98.7 1e-15 seq3953357 93.3 4e-14 seq2673866 82.4 7e-11 >seq456579 Length=1737 Score = 212 bits (234), Expect = 6e-50 Identities = 408/597 (68%), Gaps = 6/597 (1%) Strand=Plus/Plus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 ||||| |||||||| ||||||||| || ||||| |||||||| || ||||| Sbjct 500 TTCGTCATTTTCCCGATACAATACGAAGATGTGTGGAAAATGTACAAGCGAGCGGAGGCT 559 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG 116725 || || ||||| | ||||| || || |||| || | | | ||||| | | Sbjct 560 TCTTTTTGGACGACGGCTGAGGTTGATCTCGCCAAAGATAAACCCCATTGGGAAAGTCTC 619 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 || ||| |||| |||||||| ||| | || ||||||||||| | |||||||| Sbjct 620 AATGACGGCGAGAAATATTTCATCTCCCACATCCTCGCCTTTTTCGCGGGAAGCGACGGG 679 Query 116786 ATCGTCAACGAGAATCTGGTCGA-GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCG 116844 ||||| ||| ||||||| ||| || || | ||| || ||| | | || ||||| Sbjct 680 ATCGTTGTCGAAAATCTGG-CGACACGGTTTTGTAGGGAAGTCCAGATTCCAGAAGCGCG 738 Query 116845 GTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC-- 116902 || ||| ||||| ||||||||| ||||| ||| | |||||||||||||| || || Sbjct 739 GTTCTTTTACGGGTTTCAGATCATGATGGAAAACATCCACTCGGAAATGTA--CGGCCTT 796 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962 ||||| || || ||| | | ||| || || | |||| | || || || || Sbjct 797 CTCATAGATACCTACATCCAGGATTCACGCGAAAAACGATATTTGCTCAAAGCGATTGAA 856 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG 117022 || || || || ||| |||| ||||| ||||| ||| | |||||| | || Sbjct 857 ACTATTCCCGCGGTGAAAAAGAAAGCCGACTGGGCCCTGAGATGGATCAATGATAGTCGA 916 Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 ||| | |||| | | | || || || ||||| |||||| || | |||||||| || Sbjct 917 GCCTCTTTCGCCACGAGACTCGTCGCTTTCGCCATCGTCGAAGGAATTTTCTTTTCCGGA 976 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 |||||||| ||||| ||| | |||||| | || || |||||||| ||||| ||| | Sbjct 977 TCGTTCGCCGCGATATTCTGGTTGAAGAAAAGGGGTCTGATGCCCGGTCTGACCTTCTCC 1036 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 ||||| |||||| | | ||||||| | || || || || || ||||| ||||| Sbjct 1037 AACGAACTCATCAGCCGCGACGAGGCGTTACACTGTGATTTCGCTTGTTTATTGTTC 1093 >seq805419 Length=1311 Score = 154 bits (170), Expect = 1e-32 Identities = 124/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||||||||| || || ||||||||| |||| |||||||| || || || || ||||| Sbjct 1228 CTGGTGGCCTTTGCCGCTGTCGAGGGCATCTTTTTTTCGGGAAGCTTTGCGGCGATATTC 1169 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||||||||| ||| |||| || ||| | || |||||||||||||||||| Sbjct 1168 TGGCTCAAGAAACGCGGTCTCGTGCCGGGTCTGTCCTTTTCCAACGAGCTCATCTCCAGA 1109 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 ||||| || |||| |||| |||||||||| Sbjct 1108 GACGATGGCATGCACTGCGGCTTTGCCTGT 1079 >seq3878943 Length=409 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| ||||| || |||| || || | |||||||| || || | || || ||| | Sbjct 107 CTGGTTGCCTTTGCCCCCGTAGAAGGTATTTTCTTTTCCGGAAGCCTTGCGGCGATAGTC 166 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||||||||| || ||||| || | || ||| ||||| || ||||| Sbjct 167 TGGCTCAAGAAACGCGGTCTTATGCCAGGTGTATTATTTTTCAATGAGCTTATTTCCAGA 226 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 |||||||| |||| ||||||||||||||| Sbjct 227 GACGAGGGCATGCACTGCGACTTTGCCTGT 256 >seq3695667 Length=253 Score = 102 bits (112), Expect = 8e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| | || |||| || ||||| |||||||| || | ||| Sbjct 4 GGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 63 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || |||||||||||||||||||||| ||||||| ||||| ||| || Sbjct 64 ACACTGTCCGACTACAACATCCAGAAGGAGTCCACGCTCCATCTGGTGCTG 114 >seq3830724 Length=343 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118 || || || || || |||||||| ||||||||||||||| ||| | || ||||| || Sbjct 339 GTAGAAGGTGTATTTTTTTCGGGTTCTTTCGCCGCCATATTGTGGATGAAAAAACGAGGA 280 Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178 | ||||| || |||| || |||||| |||||| | ||||| || |||| || Sbjct 279 TTGATGCCGGGATTGACGTTTTCCAACGAACTCATCAGTCGCGACGAAGGGTTGCACTGT 220 Query 117179 GACTTTGCCTGTTTGCTGTTCA 117200 || ||||||||||||||||||| Sbjct 219 GATTTTGCCTGTTTGCTGTTCA 198 >seq3953357 Length=757 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||| || || ||||||| || || ||| || ||||| || ||| || Sbjct 249 GCATTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGATCTTTTGCAGCCATCTTCTGGATC 190 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 || || | || || | || ||| | || || |||||| || |||||||||||||| Sbjct 189 AAAAAGAGAGGGATCCTTCCGGGCATCACCTTTGCCAACGAACTGATCTCCAGGGACGAA 130 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 || ||||| ||||||||||| ||| || |||||| Sbjct 129 GGACTGCACTGCGACTTTGCTTGTGCTCTCTTCAAG 94 >seq2673866 Length=129 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 116799 ATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCT 116858 ||| ||| ||| | ||| || ||||||||| | ||||| ||||||| || |||| Sbjct 123 ATCAGGTTGAGAGGTTCAGCCAAGAGGTGCAGAGCACAGAGGCAAGGTGCTTTTATGGCT 64 Query 116859 TTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT--TCGACCCTCATCGACACGTA 116916 | ||||| |||||||||||| | ||||| |||||||| || || |||||||||| || Sbjct 63 TCCAGATTGCCATGGAGAACATCCACTCAGAAATGTACAGTCTAC--TCATCGACACATA 6 Query 116917 C 116917 | Sbjct 5 C 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 489662511532320