Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3915204 111 3e-19 seq962546 102 1e-16 >seq3915204 Length=498 Score = 111 bits (122), Expect = 3e-19 Identities = 130/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 135740 ATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTG 135799 |||| | ||||| ||| || ||||| |||||| | | || || | |||||||||| Sbjct 232 ATTTTCAGACGTGTATAGTGAGAGCATGGGATCGTGAGAGGCCGCTTTTATTCTGTCCTG 173 Query 135800 CAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTT-AAAA 135858 | |||||||||| ||||||||||||||| || |||| ||||||||||| || | |||| Sbjct 172 CTATGAATACTCATATGTGGGAACATCCGATAACAGCCAAACATATAGACACACTCAAAA 113 Query 135859 TATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGA 135911 ||||| | | | |||| | | ||||| || |||| | ||||||||||| Sbjct 112 GCTATGGTTAT-AGAGAAGTGAAGTGCATTGAGAAAACTTTGGCATGTGGAGA 61 >seq962546 Length=552 Score = 102 bits (112), Expect = 1e-16 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 189467 ATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAG 189526 || || ||||| |||||| || |||||| | ||| | || ||||| |||||||||||| Sbjct 389 ATTCAAATGGTCCAAGAAGGCAAGATGCATGGCTTTCTGCGGATGTACTGGGCTAAGAAG 330 Query 189527 ATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAG-TATCTATTTGAACAA 189585 || | |||||||| | | |||| || || || ||| | |||| |||||| | || | Sbjct 329 ATCTTGGAATGGACCACATCACCAGAGGAAGCCTTG-GAAATAGCCATCTATCTCAATGA 271 Query 189586 CAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 ||||||| | | || |||| |||||| |||||||| || ||| Sbjct 270 CAAGTACAACTTGGATGGCAGGGATCCCAACGGATATGTTGGT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 877402984451280