Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq760737 302 4e-77 seq456579 125 6e-24 seq3830724 122 8e-23 seq3953357 96.9 3e-15 >seq760737 Length=2966 Score = 302 bits (334), Expect = 4e-77 Identities = 588/855 (69%), Gaps = 24/855 (3%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || || | |||||| |||||||| || || | ||| ||||| | ||||||||| Sbjct 1541 TTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCAATTGAAATATT 1482 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||| ||||| || ||||| | | | | | || | || |||||||| | ||| Sbjct 1481 ATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACCCAATTCTA-CAA 1423 Query 16063 TAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 || | || |||||||||||||||||||||||||| | ||| |||||||| || | Sbjct 1422 GAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTCATTCCAATCA 1363 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 |||| ||| ||| | ||||||| |||||| |||| || || ||| | | Sbjct 1362 TTTTATTCGGGCATGCCGTTTCAAAAAAATCTTTTTCGATATCGACTGCGTCACCAACAA 1303 Query 16182 TATCTCTTACTACACTATTTAA-CGGAG---GGTTTAATAAGTGTTTAAACATTATACAA 16237 | | | | | | ||| | ||| | ||||| | | | |||||| | ||| Sbjct 1302 TTT-TGTAAATGATGGATTCATTCGGTTTTTGTTTTAAGCACTCTCTAAACACAAGGCAA 1244 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 | |||||| ||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 1243 GAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGAGTCCT 1184 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 || | | |||| ||||| | ||||||||| || || ||||| ||| |||| || || Sbjct 1183 GGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAAAAATG 1124 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||| || ||||| || | || | ||| | | | ||| | | | ||| Sbjct 1123 CCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATGAGTTATC---AGATGCAATC 1067 Query 16418 cattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTCTATTGCATTAAA 16476 || | |||||||| || || | |||||| || | | | ||| || || || ||||| Sbjct 1066 CAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTT-TCGATCGCGTTAAA 1008 Query 16477 TAAATA-Atttttt--tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 | | | ||||||| |||| | ||| |||||||| || |||| || |||||||| Sbjct 1007 AAGACACATTTTTTCATCTTCG---TCTTTGATATAAGTTTCAATTAACAAGCTATACAT 951 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| | ||||||||| ||||| || |||||||| |||||||||||| | ||| | || Sbjct 950 TTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCAAT 891 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| | |||| | | ||| ||||| || || | ||| | ||| Sbjct 890 TTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTTGC 831 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA---AGTTTTAACCA 16710 ||| || || | ||||| || || || | ||||| ||||| | | || |||| Sbjct 830 AAAGAAAGCTAATATGTACTTGATGAATGTCTTTTC---ATCTGTAGTTAATTGGTACCA 774 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 ||| ||||| |||| |||||| || || | || |||||||| ||||| || || Sbjct 773 GTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTT 714 Query 16771 TTTATACATTTTCCA 16785 |||||||||| |||| Sbjct 713 TTTATACATTGTCCA 699 >seq456579 Length=1737 Score = 125 bits (138), Expect = 6e-24 Identities = 376/577 (65%), Gaps = 10/577 (2%) Strand=Plus/Minus Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 |||| || |||||| |||||||| || || | ||||| | || || | ||||| || Sbjct 1092 AACAATAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAG 1033 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || ||||| ||||| || || | ||| || | ||| ||||| ||||| || || || Sbjct 1032 AAGGTCAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCG 973 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTA 16402 |||||||| || ||||| || ||| || || || | || | || | | || | Sbjct 972 GAAAAGAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGA 913 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | | | | |||||| | ||||| | ||||| | ||| || | || | Sbjct 912 CTATCATTG---ATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTT 856 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || || || | ||||| |||||| ||| || || |||||||| || Sbjct 855 TCAATCGCTTTGAGCAAATATCGTTTTTCGCGTGAATCCTGGATGTAGGTATCTATGAGA 796 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | | |||||||| || || || || ||||| |||||||| || |||||| | | Sbjct 795 AGGCCGTACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAACCGC 736 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | || || ||||| |||||| | || | |||||| ||| || || Sbjct 735 GCTTCTGGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGATCCCG 676 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAA 16700 ||||| | || ||||| || || ||||| || |||| ||| ||| || ||| | Sbjct 675 TCGCTTCCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATTGAGA 616 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 ||| ||| | | |||||| | | ||| ||||| | ||||||||||||| Sbjct 615 CTTTC--CCAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAGAAG 558 Query 16761 CAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | | || || ||||||||||| | |||||||| Sbjct 557 CCTCCGCTCGCTTGTACATTTTCCACACATCTTCGTA 521 >seq3830724 Length=343 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 |||| | ||| ||||||||||| ||||| |||||||| | ||| || | ||||| ||| Sbjct 200 AACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAA 259 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | || ||||| | |||||||||||| ||||| ||||| ||||| || ||||| Sbjct 260 AACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCC 319 Query 16346 GAAAAGAATATACCTTCAAC 16365 ||||| |||| |||||| || Sbjct 320 GAAAAAAATACACCTTCTAC 339 >seq3953357 Length=757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||| || || |||| |||||||||||| || | ||||| | ||| || | Sbjct 106 ACAAGCAAAGTCGCAGTGCAGTCCTTCGTCCCTGGAGATCAGTTCGTTGGCAAAGGTGAT 165 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || || | | |||| ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 166 GCCCGGAAGGATCCCTCTCTTTTTGATCCAGAAGATGGCTGCAAAAGATCCAGAGAAGAA 225 Query 16354 TATACCTTCAACTGCGGCAAATGCAA 16379 || ||||| || ||||||||||||| Sbjct 226 GATCCCTTCCACGGCGGCAAATGCAA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439569774445200