Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq760737 262 4e-65 seq456579 136 4e-27 seq3830724 116 3e-21 >seq760737 Length=2966 Score = 262 bits (290), Expect = 4e-65 Identities = 607/901 (67%), Gaps = 28/901 (3%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||| || |||||| || || | ||||||||||||||| ||||||| ||| ||||| Sbjct 1552 ATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCA 1493 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT 14020 | ||| ||||| |||||||| ||||| || ||| | | ||| | || | |||||| Sbjct 1492 ATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACCC 1433 Query 14021 AGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTC 14080 | ||||| || | | || || | || || ||||| || ||| | ||| |||| Sbjct 1432 AATTCTACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTC 1373 Query 14081 ATACCTATTAGTTT-TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 14139 || || || | ||| | | || || || |||||| ||||||| ||| || || Sbjct 1372 ATTCCAATCATTTTATTCGGGCATGCCGTTTCAAAAAAAT-CTTTTTCGATATCGACTGC 1314 Query 14140 CTCGTTTATAATAATCGTAATAAT---TTCATTAGAAGGAGGATATTTTAGA---TGTTT 14193 || | ||| | ||| || |||||| | | | ||||| | | | Sbjct 1313 GTCACCAACAATTTTGTAAATGATGGATTCATTCG---GTTTTTGTTTTAAGCACTCTCT 1257 Query 14194 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 14253 ||| | | || | |||||| ||||| | ||| || |||||| ||| | ||||||||| Sbjct 1256 AAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGA 1197 Query 14254 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 14313 ||| || | |||||| | ||| |||| ||||| | ||||||||| |||||||||||||| Sbjct 1196 AAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCC 1137 Query 14314 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14373 |||| || || || || || ||||| || ||||| | ||| |||| || || Sbjct 1136 ACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATGA--GTTA 1079 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | | | ||||| | |||||| |||| || ||||||| || | ||||| Sbjct 1078 TCAGAT-GCAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTC 1020 Query 14434 AATAGCATT--AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || || || ||| | | || ||| || || ||| || || || ||||| | Sbjct 1019 GATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTG--ATATAAGTTTCAATTAAC 962 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 |||||||||||||| | || || |||||||| || |||||||| |||||||| ||| | Sbjct 961 AAGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTT 902 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 ||||| ||| || || | |||||| | | | | |||||| || || | | Sbjct 901 ATTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAA 842 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG-AG 14670 ||| | |||||| || || ||||||| || || | || || ||||| ||| || Sbjct 841 TCAGCATTTGCAAAGAAAGCTAATATGTACTTGAT---GAATGTCTTTTCAT--CTGTAG 787 Query 14671 TT--TT--TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14726 || || | ||| || ||||||||| | | ||| ||||||| |||||||||||| Sbjct 786 TTAATTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATG 727 Query 14727 TAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14786 ||| ||||||||||||||| ||| | || | |||| ||| ||||| | |||| Sbjct 726 AAGCCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAA 667 Query 14787 A 14787 | Sbjct 666 A 666 >seq456579 Length=1737 Score = 136 bits (150), Expect = 4e-27 Identities = 389/596 (65%), Gaps = 4/596 (1%) Strand=Plus/Minus Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 |||||| || |||||||| || | |||| || | || || |||||||| || || || Sbjct 1087 TAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAGAAGGT 1028 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | || ||||||| || | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 1027 CAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCGGAAAA 968 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||| ||||| || || || || || | | || | || || ||| | | Sbjct 967 GAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGACTATC 908 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 |||||| | ||||| || | ||| ||||| | || |||||||| || Sbjct 907 ATTGATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTTTCAATCGC 848 Query 14440 ATTAAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 || | |||| | | ||| | | | | || | ||||| ||||| || || | || Sbjct 847 TTTGAGCAAATATCGTTTTTCGCGTGAATCCTGG--ATGTAGGTATCTATGAGAAGGCCG 790 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 |||||||| ||||| ||||||||||| |||||||| || ||||| | | |||||| Sbjct 789 TACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAACCGCGCTTCT 730 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 | || || || |||| | | |||| |||||| ||| || || || || Sbjct 729 GGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGATCCCGTCGCTT 670 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 | || ||||| || | |||| || || |||| ||| | | |||| ||| | Sbjct 669 CCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATTGAGACTTTCC 610 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 |||| || | ||| || | ||||| || ||| | ||||||||| ||| | ||| Sbjct 609 CAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAGAAGCCTCCGCT 550 Query 14738 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGA 14793 || |||||| ||| | |||| ||| ||| || |||| || |||||||| Sbjct 549 CGCTTGTACATTTTCCACACATCTTCGTATTGTATCGGGAAAATGACGAATCTTGA 494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||||||| | ||||| ||||| | ||||||||||| ||||| || | || ||||| Sbjct 1449 ATAACGCCCGTCTTTTGGTATTCCCCTACTCTTTTTTCGAAGAAATTGCTCTTCCCTTCT 1390 Query 13961 AGTGATATATTTTCCATAAAATCAAATGG 13989 || |||||||| |||||||||||||| || Sbjct 1389 AGGGATATATTCTCCATAAAATCAAAAGG 1361 >seq3830724 Length=343 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||||||||| || | || || || | ||| || |||||||| ||||| || Sbjct 206 AAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAAAACGTC 265 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| |||||||||||||||||||| | ||| ||||| || ||||| || || ||||| Sbjct 266 AATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCCGAAAAA 325 Query 14321 AATA 14324 |||| Sbjct 326 AATA 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458419557971760