Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq760737 300 1e-76 seq3830724 132 4e-26 seq171851 82.4 7e-11 >seq760737 Length=2966 Score = 300 bits (332), Expect = 1e-76 Identities = 600/881 (68%), Gaps = 15/881 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||| || || | ||||| | ||| ||||| |||| || ||||| | ||| |||| Sbjct 1540 TTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCAATTGAAATATTA 1481 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAG--ACTTTTTCACAACCTAACTCTGTTA 11456 ||||||||| ||| || || | || ||| ||||||| |||||| || ||| | Sbjct 1480 TCCATAAAGTCAAACGGGTTTT-TAGCGCGAAATAACTTTTT-ACAACCCAATTCTACAA 1423 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | | ||||| || |||||||||||||| ||| | | |||||| || || | Sbjct 1422 GAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTCATTCCAATCA 1363 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGA 11573 | ||| || | ||||| || ||||| |||| || || ||| | | Sbjct 1362 TTTTATTCGGGCATGCCGTTTCAAAAAAATCTTTTTCGATATCGACTGCGTCACCAACAA 1303 Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 || | | | || ||| || | | | | | ||| | | | |||||| | || | Sbjct 1302 TTTTGTAAATGATGGATTCATTCGGTTTTTGTTTTAAGCACTCTCTAAACACAAGGCAAG 1243 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||||| |||||||| |||||||||||| |||| ||| || ||||| || | ||| | Sbjct 1242 AAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGAGTCCTG 1183 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 | | ||| |||| ||||| | ||||||||| ||||| ||||| ||| |||| || || | Sbjct 1182 GAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAAAAATGC 1123 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT---ATCC 11810 | || ||| |||||| || | || || ||| || || || | |||| |||| Sbjct 1122 CTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATGAGTTATC---AGATGCAATCC 1066 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 | | ||||||||||| |||||||| ||||| | ||||| || |||||||| | Sbjct 1065 AAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTCGATCGCGTTAAAAA 1006 Query 11871 AATGCATTTTTTCTATATTA-TCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | ||||||||| || || ||| | | ||| || || ||||| || ||||||||||| Sbjct 1005 GACACATTTTTTC-ATCTTCGTCTTTGATATAAGTTTCAATTAACAAGCTATACATTTCC 947 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 | ||||||||||||||| || || ||||| ||||| || ||| | |||| | || Sbjct 946 GTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCAATTTGA 887 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || || | |||||| | ||| ||| || |||||| | |||| | |||||| Sbjct 886 ACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTTGCAAAG 827 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 || |||| ||| | || || || ||||| ||| ||||||||| | ||| || | | Sbjct 826 AAAGCTAATATGTACTTGATGAATGTCTTTTCATCTGTAGTTAATTGGTACCAGTCTTGT 767 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 ||||| |||| |||||| ||||| | ||| |||||||| ||| || || ||||||| Sbjct 766 AAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTTTTTATAC 707 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 ||| |||| | | || ||| | || || || | ||| || Sbjct 706 ATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAAA 666 >seq3830724 Length=343 Score = 132 bits (146), Expect = 4e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| ||||| ||||||||||| || || |||||||| | ||| || ||||| || ||| Sbjct 200 AACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAA 259 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || ||||| |||||||||||||||||||| ||||| ||||| || || || ||||| Sbjct 260 AACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCC 319 Query 11741 GAAAAGAATATTCCCTCCACA 11761 ||||| |||| || || ||| Sbjct 320 GAAAAAAATACACCTTCTACA 340 >seq171851 Length=421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAA 12001 ||||| || || || ||||||||||| ||| || || | | ||| || ||| | | Sbjct 418 TCCATCGCAATCTGGAATCCATAGAAGCATTTGGCTTCAGGAACCTGAACCTCCTGACTA 359 Query 12002 AATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATA 12061 ||||| ||| | ||||| ||||||||||||||||| || | ||| || || || |||| | Sbjct 358 AATCTCTCCACCAAATTTTCATTTACAATACCATCGCTGGCTGCGAAGAAGGCAAGTACA 299 Query 12062 TGTTTTATAAAGT 12074 || ||| |||| Sbjct 298 TGGGATATGAAGT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445284318370080