Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq760737 268 8e-67 seq456579 141 8e-29 seq3830724 111 1e-19 >seq760737 Length=2966 Score = 268 bits (296), Expect = 8e-67 Identities = 608/900 (68%), Gaps = 26/900 (3%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||| || |||||| || || | ||||||||||||||| ||||||| ||| ||||| Sbjct 1552 ATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCA 1493 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 | ||| ||||| |||||||| ||||| || ||| | | ||| | || | |||||| Sbjct 1492 ATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACCC 1433 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 | ||||| || | | || || | ||| || ||||| || ||| | ||| |||| Sbjct 1432 AATTCTACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTC 1373 Query 13749 ATACCTATTAGTTT-TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 || || || | ||| | | || || || |||||| ||||||| ||| || || Sbjct 1372 ATTCCAATCATTTTATTCGGGCATGCCGTTTCAAAAAAAT-CTTTTTCGATATCGACTGC 1314 Query 13808 CTCTTTTATAATAATTGTAA-TAATC---TCATTAGAAGGAGGATATTTTAGA---TGTT 13860 || | ||| |||||| | || ||||| | | | ||||| | | Sbjct 1313 GTCACCAACAATT-TTGTAAATGATGGATTCATTCG---GTTTTTGTTTTAAGCACTCTC 1258 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 |||| | | || | |||||| ||||| | ||| || |||||| ||| | |||||||| Sbjct 1257 TAAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTG 1198 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 |||| || | |||||| | ||| |||| ||||| | ||||||||| ||||| ||||| | Sbjct 1197 AAAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATC 1138 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | |||| || || || || || ||||| || ||||| | ||| |||| || || Sbjct 1137 CACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATGA--GTT 1080 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 | | | | ||||| | |||||| |||| || ||||||| || | |||| Sbjct 1079 ATCAGAT-GCAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTT 1021 Query 14101 CAATAGCATT--AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 | || || || ||| | | ||| ||| || || ||| || || || ||||| | Sbjct 1020 CGATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTG--ATATAAGTTTCAATTAA 963 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 |||||||||||||| | || || |||||||| || |||||||| |||||||||||| | Sbjct 962 CAAGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTT 903 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||| | ||| ||||| | |||||| | | | | |||||| || || | Sbjct 902 TATTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCA 843 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGT--T 14335 |||| | |||||| || || ||||||| || || | || || ||||| ||| | Sbjct 842 ATCAGCATTTGCAAAGAAAGCTAATATGTACTTGAT---GAATGTCTTTTCATCTGTAGT 786 Query 14336 GAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14395 | || | ||| || ||||||||| | | ||| ||||||| |||||||||||| Sbjct 785 TAATTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGA 726 Query 14396 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| ||||||||||||||| ||| | || | |||| ||| ||||| | ||||| Sbjct 725 AGCCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAAA 666 >seq456579 Length=1737 Score = 141 bits (156), Expect = 8e-29 Identities = 390/596 (65%), Gaps = 4/596 (1%) Strand=Plus/Minus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 |||||| || |||||||| || | |||| || | || || |||||||| || || || Sbjct 1087 TAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAGAAGGT 1028 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||||| || | ||| || ||||| ||||| || || || || |||||||| Sbjct 1027 CAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCGGAAAA 968 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| ||||| || || || || || | | || | || || ||| | | Sbjct 967 GAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGACTATC 908 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 |||||| | ||||| || | ||| ||||| | || |||||||| || Sbjct 907 ATTGATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTTTCAATCGC 848 Query 14108 ATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || | |||||| | ||| | | | | || || |||| ||||| || || | || Sbjct 847 TTTGAGCAAATATCGTTTTTCGCGTGAATCCTGGA--TGTAGGTATCTATGAGAAGGCCG 790 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| ||||| ||||||||||| |||||||| || |||||| | | ||||| Sbjct 789 TACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAACCGCGCTTCT 730 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | || |||||| |||| | | |||| |||||| ||| || || || || Sbjct 729 GGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGATCCCGTCGCTT 670 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 | || ||||| || | |||| || || |||| ||| | | ||||| ||| | Sbjct 669 CCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATTGAGACTTTCC 610 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 |||| || | ||| || | ||||| || ||| | ||||||||| ||| | ||| Sbjct 609 CAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAGAAGCCTCCGCT 550 Query 14406 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGA 14461 || |||||| ||| | |||| ||| ||| || |||| || ||||| || Sbjct 549 CGCTTGTACATTTTCCACACATCTTCGTATTGTATCGGGAAAATGACGAATCTTGA 494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||||||| | ||||| ||||| | ||||||||||| ||||| || | || ||||| Sbjct 1449 ATAACGCCCGTCTTTTGGTATTCCCCTACTCTTTTTTCGAAGAAATTGCTCTTCCCTTCT 1390 Query 13629 AGTGATATATTTTCCATAAAATCAAATGG 13657 || |||||||| |||||||||||||| || Sbjct 1389 AGGGATATATTCTCCATAAAATCAAAAGG 1361 >seq3830724 Length=343 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||||||||| || | || || || | ||| || |||||||| ||||| || Sbjct 206 AAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAAAACGTC 265 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| |||||||||||||||||||| | ||| ||||| || || || || || ||||| Sbjct 266 AATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCCGAAAAA 325 Query 13989 AATA 13992 |||| Sbjct 326 AATA 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455931800158800