Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq760737 255 5e-63 seq456579 143 2e-29 seq3830724 116 3e-21 >seq760737 Length=2966 Score = 255 bits (282), Expect = 5e-63 Identities = 602/899 (67%), Gaps = 24/899 (3%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| || |||||| || || | ||||||||||||||||||||||| ||| ||||| Sbjct 1552 ATAACCCCTGATTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCA 1493 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 | ||| ||||| |||||||| || || || ||| | | ||| | || | |||||| Sbjct 1492 ATTGAAATATTATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACCC 1433 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 | ||||| | | | || || | ||| || ||||| || ||| | ||| |||| Sbjct 1432 AATTCTACAAGAAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTC 1373 Query 13537 ATACCTATTAGTTT-TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC 13595 || || || | ||| | | || || || |||||| ||||||| ||| || || Sbjct 1372 ATTCCAATCATTTTATTCGGGCATGCCGTTTCAAAAAAAT-CTTTTTCGATATCGACTGC 1314 Query 13596 CTCGTTTATAATAATCTTAATAATG---TCATTAGAAGGAGGATATTTTAGA---TGTTT 13649 || | ||| | | ||| ||| ||||| | | | ||||| | | | Sbjct 1313 GTCACCAACAATTTTGTAAATGATGGATTCATTCG---GTTTTTGTTTTAAGCACTCTCT 1257 Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 ||| | | || | |||||| ||||| | ||| || |||||| ||| | ||||||||| Sbjct 1256 AAACACAAGGCAAGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGA 1197 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 ||| || | |||||| | ||| |||| ||||| | ||||||||| |||||||||||||| Sbjct 1196 AAAAGTGAGTCCTGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCC 1137 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829 |||| || || || || || ||||| || |||| | ||| ||| ||| || Sbjct 1136 ACAAAAAAAAATGCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAA---ATGAGTT 1080 Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889 | || ||||| | |||||| |||| || ||||||| || | ||||| Sbjct 1079 ATCAGATGCAATCCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTC 1020 Query 13890 GATTGCATT--GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 13947 ||| || || || | | || ||| || || ||| || || || ||||| | Sbjct 1019 GATCGCGTTAAAAAGACACATTTTTTCATCTTCGTCTTTG--ATATAAGTTTCAATTAAC 962 Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007 |||||||||||||| | || || ||||| || || |||||||| |||||||| ||| | Sbjct 961 AAGCTATACATTTCCGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTT 902 Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 ||||| ||| || || | |||||| | | | ||||| ||||| | | Sbjct 901 ATTTCTGCAATTTGAACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAA 842 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGT--TG 14124 ||| | |||||| || || ||||||| || || | || || ||||| ||| | Sbjct 841 TCAGCATTTGCAAAGAAAGCTAATATGTACTTGAT---GAATGTCTTTTCATCTGTAGTT 785 Query 14125 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 | || | ||| || ||||||||| | | ||| ||||||| |||||||||||| | Sbjct 784 AATTGGTACCAGTCTTGTAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAA 725 Query 14185 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || ||||||||||||||| ||| | || | |||| ||| ||||| | ||||| Sbjct 724 GCCTGTGCTTTTTTATACATTGTCCAAAATTTATCATATTGTATTGGAAATAGAACAAA 666 >seq456579 Length=1737 Score = 143 bits (158), Expect = 2e-29 Identities = 393/598 (66%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| || |||||||| || | |||| || | || || |||||||| || || || Sbjct 1087 TAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAGAAGGT 1028 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | || ||||||| || | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 1027 CAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCGGAAAA 968 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT--TTTTTG 13833 ||| ||||| || || || || || | |||| | || || ||| | | Sbjct 967 GAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCGACTATC 908 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 ||| |||||| | ||||| || | ||| ||||| | || ||||| || Sbjct 907 ATTG--ATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAATAGTTTCAATC 850 Query 13894 GCATTGAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 || |||| |||| | | ||| | | | | || | ||||| ||||| || || | || Sbjct 849 GCTTTGAGCAAATATCGTTTTTCGCGTGAATCCTGG--ATGTAGGTATCTATGAGAAGGC 792 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 |||||||| ||||| |||||||| || |||||||| || ||||| | | |||| Sbjct 791 CGTACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAACCGCGCTT 732 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 ||| || || ||| |||| | | |||| ||||| ||| || || || | Sbjct 731 CTGGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGATCCCGTCGC 672 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14131 | | || ||||| || | |||| || || |||| ||| | | ||||| ||| Sbjct 671 TTCCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATTGAGACTTT 612 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 ||||| || | ||| || | ||||| || ||| | ||||||||| ||| | | Sbjct 611 CCCAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAAGAAGCCTCCG 552 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGA 14249 || || |||||| ||| | |||| ||| ||| || |||| || |||||||| Sbjct 551 CTCGCTTGTACATTTTCCACACATCTTCGTATTGTATCGGGAAAATGACGAATCTTGA 494 >seq3830724 Length=343 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||||||||| || | || || || | ||| || |||||||| ||||| || Sbjct 206 AAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAAAACGTC 265 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| |||||||||||||||||||| | ||| ||||| || ||||| || || ||||| Sbjct 266 AATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCCGAAAAA 325 Query 13777 AATA 13780 |||| Sbjct 326 AATA 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454849108494480