Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq805419 145 1e-29 seq456579 104 3e-17 seq3878943 98.7 1e-15 seq817554 93.3 6e-14 >seq805419 Length=1311 Score = 145 bits (160), Expect = 1e-29 Identities = 238/341 (70%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||| |||||||||||| || ||||| || ||||||||||| |||||||| || ||||| Sbjct 1238 CGCCACCAGACTGGTGGCCTTTGCCGCTGTCGAGGGCATCTTTTTTTCGGGAAGCTTTGC 1179 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 ||| || || ||||||||||| ||||| ||| |||| || ||| | |||||| | Sbjct 1178 GGCGATATTCTGGCTCAAGAAACGCGGTCTCGTGCCGGGTCTGTCCTTTTCCAACGAGCT 1119 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCT 125596 || || ||||||| ||| | ||||| | ||||||| || ||||| ||||| | | Sbjct 1118 CATCTCCAGAGACGATGGCATGCACTGCGGCTTTGCCTGTCATGTGTTTGGCAACCACTT 1059 Query 125597 GCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC--ATCAACATTGTAACCGATGCCGTG 125654 | || || | || ||| || ||| || |||| ||| | || || || ||| Sbjct 1058 G------AAGAACAAACACACCGAAGAGAAGATCGGATCA--ATTATCACGGAGGCGGTG 1007 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 ||| ||| | ||||| || | |||| |||| || |||||||||| | Sbjct 1006 GAGATCGAAAATATGTTTC---AGGAGAGCATACCCAAAGGCATCATAGGCATGAACTAC 950 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || ||| || ||||||||||||||| || || || || Sbjct 949 CATCTGATGGGCTGGTACATAGAGTTTGTCGCCGACCGACT 909 >seq456579 Length=1737 Score = 104 bits (114), Expect = 3e-17 Identities = 361/557 (65%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| || |||| || ||||||||| | ||||| ||||| || Sbjct 533 TGGAAAATGTACAAGCGAGCGGAGGCTTCTTTTTGGACGACGGCTGAGGTTGATCTCGCC 592 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 || || | ||||||| | || | | ||| ||| | | || || || ||| Sbjct 593 AAAGATAAACCCCATTGGGAAAGTC---TCAATGACGGCGAGAAATATTTCATCTCCCAC 649 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 || | ||||| || || || ||| || ||||| ||| |||||| |||||| || Sbjct 650 ATCCTCGCCTTTTTCGCGGGAAGCGACGGGATCGTTGTCGAAAATCTGGCGACACGGTTT 709 Query 125202 TCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTG 125259 | | || | | ||| ||||||| | | || ||||||||| || || |||||||| | Sbjct 710 TGT--AGGGAAGTCCAGATTCCAGAAGCGCGGTTCTTTTACGGGTTTCAGATCATGATGG 767 Query 125260 AGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC 125319 | ||| | ||||||||||||||| || || || | ||||| | ||| | | Sbjct 768 AAAACATCCACTCGGAAATGTACGGCCTTCTCATAGATACCTACATCCAGGATTCACGCG 827 Query 125320 GTAAAC---ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTC 125376 |||| | ||||| || || || || || | || | | || || || Sbjct 828 AAAAACGATATTTGCTC---AAAGCGATTGAAACTATTCCCGCGGTGAAAAAGAAAGCCG 884 Query 125377 AATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | | |||||| |||| | | || | || | |||| ||||| || || Sbjct 885 ACTGGGCCCTGAGATGGATCAATGATAGTCGAG-CCTCTTTCGCCACGAGACTCGTCGCT 943 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 |||||| ||| || || || |||||||| || || || || || || ||| | ||| Sbjct 944 TTCGCCATCGTCGAAGGAATTTTCTTTTCCGGATCGTTCGCCGCGATATTCTGGTTGAAG 1003 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 || | || || |||||||| ||||| | ||||| | || || ||||||| Sbjct 1004 AAAAGGGGTCTGATGCCCGGTCTGACCTTCTCCAACGAACTCATCAGCCGCGACGAGGCG 1063 Query 125556 CTACACTGTGACTTTGC 125572 |||||||||| || || Sbjct 1064 TTACACTGTGATTTCGC 1080 >seq3878943 Length=409 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483 |||||||| || || ||| ||||||| || || |||||||| || || ||||||| || Sbjct 104 AGACTGGTTGCCTTTGCCCCCGTAGAAGGTATTTTCTTTTCCGGAAGCCTTGCGGCGATA 163 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT--AACGAGTTTATAT 125541 | ||||||||||| ||||| || ||||| || || | | || ||| |||| | Sbjct 164 GTCTGGCTCAAGAAACGCGGTCTTATGCCAGG--TGTATTATTTTTCAATGAGCTTATTT 221 Query 125542 CTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 | ||||||||||| | ||||| ||||||||| || ||||| |||| Sbjct 222 CCAGAGACGAGGGCATGCACTGCGACTTTGCCTGTCACGTGTTTGTCAAC 271 >seq817554 Length=629 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||||||| ||||| |||| || || |||||||| |||||||| ||||| ||||| ||| Sbjct 415 ATGTACAAGAAGGCAGAGGCATCATTCTGGACGGTGGAAGAGGTTGATCTATCCAAAGAC 356 Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTG 125147 || || | ||||||| | ||| ||| | ||| | | ||||| || || | ||| Sbjct 355 ATGAACCACTGGGAGAAGC---TGAATGACAACGAGAGGCACTTTATCTCACATGTGTTG 299 Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAA 125179 ||||||||||| | || || |||||||| Sbjct 298 GCCTTCTTTGCTGCTAGTGACGGTATCGTCAA 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704300051446320