Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq760737 320 1e-82 seq3830724 131 1e-25 seq456579 102 7e-17 seq3772600 87.8 1e-12 seq942746 84.2 2e-11 >seq760737 Length=2966 Score = 320 bits (354), Expect = 1e-82 Identities = 583/849 (69%), Gaps = 12/849 (1%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| || |||| ||||||||||||||||||||| | ||| ||||| | |||||||| Sbjct 1541 TTTTTGGTACTCGCCAACTCTTTTTTCAAAAAAGTTAGATTTCCCTTCAATTGAAATATT 1482 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 |||||||| || || || ||||| | | | | | |||||||| || ||||||| | Sbjct 1481 ATCCATAAAGTCAAACGGGTTTTTAGCGCGAAATAACTTTTTACAACCCAATTCTACAAG 1422 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | | ||| || ||||| ||||| ||||||||||| | ||| |||||||| || | Sbjct 1421 AAGACGGTCTGCCACAAATTCTATATACTGTTTCATAAGATCTTTATTCATTCCAATCAT 1362 Query 13039 TTT-TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 ||| | | ||||| | | | ||||| | |||||| ||||| ||||| || ||| | Sbjct 1361 TTTATTCGGGCATGCCGTTTCAAAAAAA-TCTTTTTCGATATCGACTGCGTCACCAACAA 1303 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCT-----TAAACATCATACA 13152 | | || | | || || | |||| | | || |||||| | || Sbjct 1302 TTTTGTAAATGATGGATTC--ATTCGGTTTTTGTTTTAAGCACTCTCTAAACACAAGGCA 1245 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 | |||||| || || || ||||| |||||| |||| ||||||||||| || || || Sbjct 1244 AGAAAAATCGCAATGTAAGCCTTCGTCTCTAGAAATTAATTCGTTTGAAAAAGTGAGTCC 1185 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 || | | ||||| ||||| | ||||||||| ||||| || || || ||||||| || Sbjct 1184 TGGAAGCAACCCTCTCTTTTTCAGCCAAAATATCGCAGCGAATGATCCACAAAAAAAAAT 1125 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 ||||| || |||||| || || ||||| || || | | ||| | | || Sbjct 1124 GCCTTCTACACATGCAAAAGCGATTAACCTCTCTGCAAATGAGTTATC---AGATGCAAT 1068 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| | ||||| | || || | ||||||||| | |||| || |||||||| Sbjct 1067 CCAAGCTAAAGCCCAATCAGCCTTCTTTTTAACGCAAGGTAACGTTTCGATCGCGTTAAA 1008 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 | | | ||||||| | |||| |||||||| || || || |||||||||||||| Sbjct 1007 AAGACACATTTTTTCATCTTCGTCTTTGATATAAGTTTCAATTAACAAGCTATACATTTC 948 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 | |||||||||||||||||| || || || |||||||| ||| | |||| | || Sbjct 947 CGTATGAATATTTTCCATCGCAATCTGAAAGCCATAAAAGCATTTTATTTCTGCAATTTG 888 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 |||||||| |||||| | ||| ||||| || || | ||| | ||||| Sbjct 887 AACTTCGGCTAAAAATCGCTGGACTATATTTTCTAATACAATGCAATCAGCATTTGCAAA 828 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 ||||| | ||||| ||| || ||| | ||||| | | | || | |||| ||| | Sbjct 827 GAAAGCTAATATGTACTTGATGAATGTCTTTTCATCTGTAGTTAATTGGTACCAGTCTTG 768 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||| |||||| || || | ||| |||||||| ||||| || || ||||| Sbjct 767 TAAATCCTTTGTTAAATCAACTTCATTAACTGTCCAAAATGAAGCCTGTGCTTTTTTATA 708 Query 13693 CATCATCCA 13701 ||| |||| Sbjct 707 CATTGTCCA 699 >seq3830724 Length=343 Score = 131 bits (144), Expect = 1e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 |||| || ||| ||||||||||||||||| ||||| || | ||| || || ||||| ||| Sbjct 200 AACAGCAAACAGGCAAAATCACAGTGCAACCCTTCGTCGCGACTGATGAGTTCGTTGGAA 259 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || | |||||||| | ||||||||||| ||||| ||||| || || || |||||| Sbjct 260 AACGTCAATCCCGGCATCAATCCTCGTTTTTTCATCCACAATATGGCGGCGAAAGAACCC 319 Query 13262 GaaaaaaaTATTCCTTCAAC 13281 |||||||||| ||||| || Sbjct 320 GAAAAAAATACACCTTCTAC 339 >seq456579 Length=1737 Score = 102 bits (112), Expect = 7e-17 Identities = 371/575 (65%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 |||| | ||| || ||||||||||| || | || || | || || || ||||| || Sbjct 1092 AACAATAAACAAGCGAAATCACAGTGTAACGCCTCGTCGCGGCTGATGAGTTCGTTGGAG 1033 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || ||||| ||||| || || | ||| || | ||| ||||| || || ||||| || Sbjct 1032 AAGGTCAGACCGGGCATCAGACCCCTTTTCTTCAACCAGAATATCGCGGCGAACGATCCG 973 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCATA------CGT 13314 ||||| || |||||||| || || || || | | || | | | | || Sbjct 972 GAAAAGAAAATTCCTTCGACGATGGCGAAAGCGACGAGTCTCGTGGCGAAAGAGGCTCG- 914 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 ||||| || ||||| | |||||||| ||||| | ||| || | || Sbjct 913 ACTATCATT------GATCCATCTCAGGGCCCAGTCGGCTTTCTTTTTCACCGCGGGAAT 860 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | |||| || || || | ||||| |||||| || || || |||||||| Sbjct 859 AGTTTCAATCGCTTTGAGCAAATATCGTTTTTCGCGTGAATCCTGGATGTAGGTATCTAT 800 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | | || |||||||| || || || ||||||||| || || || || ||||| | Sbjct 799 GAGAAGGCCGTACATTTCCGAGTGGATGTTTTCCATCATGATCTGAAACCCGTAAAAGAA 740 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | || |||| | ||| ||||| |||| | | || | |||||| ||| || Sbjct 739 CCGCGCTTCTGGAATCTGGACTTCCCTACAAAACCGTGTCGCCAGATTTTCGACAACGAT 680 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--T 13612 |||||| || | || ||||| || || ||||| || || | ||| ||| || | Sbjct 679 CCCGTCGCTTCCCGCGAAAAAGGCGAGGATGTGGGAGATGAAATATTTCTCGCCGTCATT 620 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 || ||||| ||||| || |||||| | | ||| ||||| | ||||||||| Sbjct 619 GA-GACTTT-CCCAATGGGGTTTATCTTTGGCGAGATCAACCTCAGCCGTCGTCCAAAAA 562 Query 13673 GAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||||| | || ||| ||||| |||| | ||| Sbjct 561 GAAGCCTCCGCTCGCTTGTACATTTTCCACACATC 527 >seq3772600 Length=295 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 13228 TTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGC 13287 |||||| | |||||| || || ||||| || ||||| || || || || || |||||||| Sbjct 227 TTTTTTCAGCCAAAAGATGGCTGCAAAGGACCCCGAGAAGAAGATGCCCTCTACTGCTGC 168 Query 13288 AAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCA 13347 |||||| | | | |||||| |||| || ||| ||||||| ||| | ||||| Sbjct 167 AAACGCCACAAGTCGCTCACCAAACGTTGCATCCTTAGCACCTATCCATTTTATTGCCCA 108 Query 13348 GTTTGCTTTTTGTTTAACGCA 13368 || |||||||| ||| || || Sbjct 107 GTCTGCTTTTTTTTTCACACA 87 >seq942746 Length=519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || || || || | ||| |||||||| || | || || Sbjct 371 TCGTCTCTGCTGATGAGTTCATTGGAGAAAGTCAAACCAGGCATAAGACCCCTCTTCTTT 312 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || |||||||| || || || || || || || || || || ||||| || Sbjct 311 AGCCAGAAGATGGCAGCAAAAGACCCTGAGAAGAAGATACCCTCTACAGCAGCAAAAGCA 252 Query 13295 ATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCT 13354 | || ||||||||||| || ||| | | | ||||| || ||||||| || Sbjct 251 ACCACTCTTTCACCATAGGTGGCATTGTCAGAGTTGATCCAGTTGAGTGCCCAGTCGGCC 192 Query 13355 TTTTGTTTAAC--GCAGTTCATATTTTCTATTGCGTTAAATA 13394 || ||||| || || | ||| |||| ||||| || |||| Sbjct 191 TTCTGTTTGACTGGCGG--CATGGTTTCAATTGCATTGAATA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410138609903364