Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq456579 188 2e-42 seq760737 156 9e-33 seq942746 131 4e-25 seq3953357 102 2e-16 seq3915204 100 6e-16 seq171851 96.9 8e-15 seq650275 89.7 1e-12 seq3113445 87.8 4e-12 seq559689 84.2 5e-11 >seq456579 Length=1737 Score = 188 bits (208), Expect = 2e-42 Identities = 409/602 (68%), Gaps = 15/602 (2%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| || || || || ||||| | | ||| | |||| |||||||| | || | Sbjct 497 AGATTCGTCATTTTCCCGATACAATACGAAGATGTGTGGAAAATGTACAAGCGAGCGGAG 556 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||||||||| | || || ||||| | | || | ||||| ||| | Sbjct 557 GCTTCTTTTTGGACGACGGCTGAGGTTGATCTCGCCAAAGATAAACCCCATTGGGAAAGT 616 Query 268820 TTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGA 268878 | || | || | || |||| || || | || || || ||||| || | || || Sbjct 617 CTCAATGACGGCGAGA-AATATTTCATCTCCCACATCCTCGCCTTTTTCGCGGGAAGCGA 675 Query 268879 TGGTATCGTTAACGAAAATCTAGTAGAGAAG-TTCTGTCAAGAGGTACAGATTCCTGAAG 268937 || |||||| ||||||||| | || | | || ||| || || |||||||| |||| Sbjct 676 CGGGATCGTTGTCGAAAATCTGGC-GACACGGTTTTGTAGGGAAGTCCAGATTCCAGAAG 734 Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997 | | | |||||||| || ||||| || ||||| || || || || |||||| | | Sbjct 735 CGCGGTTCTTTTACGGGTTTCAGATCATGATGGAAAACATCCACTCGGAAATGTACGGCC 794 Query 268998 TATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT----CT 269053 | | |||||||| || || | ||| |||||| | || ||||| || | Sbjct 795 TTCTCATAGATACCTACATCCAGGATTCACGCGAAAA---ACGA-TATTTGCTCAAAGCG 850 Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 || |||||| | |||| ||| ||| | || ||||| |||| |||||| || ||| Sbjct 851 ATTGAAACTATTCCCGCGGTGAAAAAGAAAGCCGACTGGGCCCTGAGATGGATCAATGAT 910 Query 269114 AG-CGCGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || || |||| | || || | || ||||| ||| || ||||| || |||||| Sbjct 911 AGTCGAGCCTCTTTCGCCACGAGACTCGTCGCTTTCGCCATCGTCGAAGGAATTTTCTTT 970 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || || || ||||| || || |||||||||||||| || || ||||| || | || Sbjct 971 TCCGGATCGTTCGCCGCGATATTCTGGTTGAAGAAAAGGGGTCTGATGCCCGGTCTGACC 1030 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||| |||||| | || ||| | ||||| | |||||||| || |||||||||||||| Sbjct 1031 TTCTCCAACGAACTCATCAGCCGCGACGAGGCGTTACACTGTGATTTCGCTTGTTTATTG 1090 Query 269291 TT 269292 || Sbjct 1091 TT 1092 >seq760737 Length=2966 Score = 156 bits (172), Expect = 9e-33 Identities = 388/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||||||||| ||| | | | |||| ||||| ||| | || ||| Sbjct 666 TTTGTTCTATTTCCAATACAATATGATAAATTTTGGACAATGTATAAAAAAGCACAGGCT 725 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || |||||||| || | ||||| ||| | | | || ||| ||| ||| | | ||| Sbjct 726 TCATTTTGGACAGTTAATGAAGTTGATTTAACAAAGGATTTACAAGACTGGTACCAATTA 785 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | |||| |||| | ||| || || || | || || |||||| | |||| | Sbjct 786 ACTACAGATGAAAAGACATTCATCAAGTACATATTAGCTTTCTTTGCAAATGCTGATTGC 845 Query 268883 ATCGTTAACGAAAATCTAGT--AGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 || || |||||| |||| || || || | | || || || ||| | ||| | Sbjct 846 ATTGTATTAGAAAATATAGTCCAGCGATTTTTAGCC--GAAGTTCAAATTGCAGAAATAA 903 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 ||| ||||| || || ||||| || || |||||||||||| | || ||||| || | | Sbjct 904 AATGCTTTTATGGCTTTCAGATTGCGATGGAAAATATTCATACGGAAATGTATAGCTTGT 963 Query 269001 TAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAA 269060 |||| || |||||||| | || | | ||||| | | || ||| | || || Sbjct 964 TAATTGAAACTTATATCAAAGACGAAGATGAAAAAATGTGTCTTTTTAACGCGATCGAAA 1023 Query 269061 CTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCG 269117 | | || || | ||| || |||| |||||| | ||||| | |||| | Sbjct 1024 CGTTACCTTGCGTTAAAAAGAAGGCTGATTGGGCTTTAGCTTGGATTGCATCTGATAAC- 1082 Query 269118 CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT 269177 | | | ||| |||||| | |||||||| ||||||||| || || |||| || | Sbjct 1083 --TCATTTGCAGAGAGGTTAATCGCTTTTGCATGTGTAGAAGGCATTTTTTTTTGTGGAT 1140 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTA 269237 | || || || || |||||| |||| || ||||| | | |||||| | ||||| || | Sbjct 1141 CATTCGCTGCGATATTTTGGCTGAAAAAGAGAGGGTTGCTTCCAGGACTCACTTTTTCAA 1200 Query 269238 ACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 ||||||| || || |||||||| ||||| ||||| || |||| Sbjct 1201 ACGAATTAATTTCTAGAGACGAAGGCTTACATTGCGATTTTTCTTG 1246 >seq942746 Length=519 Score = 131 bits (144), Expect = 4e-25 Identities = 135/176 (77%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 269087 GAATGGGCTCTGAAATGGATAAAC---GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCT 269143 || ||||| || || ||||| ||| || | || | || || ||||| | |||||| Sbjct 196 GACTGGGCACTCAACTGGATCAACTCTGACAATGCCACCTATGGTGAAAGAGTGGTTGCT 255 Query 269144 TTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAG 269203 ||||| |||||||| ||||| ||||| || ||||||||||| || ||||| ||| | ||| Sbjct 256 TTTGCTGCTGTAGAGGGTATCTTCTTCTCAGGGTCTTTTGCTGCCATCTTCTGGCTAAAG 315 Query 269204 AAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 || || || |||||||| || || |||||||| || ||| | || ||||| ||||| Sbjct 316 AAGAGGGGTCTTATGCCTGGTTTGACTTTCTCCAATGAACTCATCAGCAGAGACGA 371 >seq3953357 Length=757 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| |||||||| || ||||| || ||||| || || |||||||| || ||||| ||| Sbjct 251 TTGCATTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGATCTTTTGCAGCCATCTTCTGGA 192 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 | || || ||||| | | || || | || || | |||||| |||| |||||||| Sbjct 191 TCAAAAAGAGAGGGATCCTTCCGGGCATCACCTTTGCCAACGAACTGATCTCCAGGGACG 132 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 |||| | ||||||||||| |||||| Sbjct 131 AAGGACTGCACTGCGACTTTGCTTGT 106 >seq3915204 Length=498 Score = 100 bits (110), Expect = 6e-16 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 165245 ACGTGTATAGTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAAT 165304 ||||||||||| ||||| ||| || | | | || | | |||||||| ||||||||| Sbjct 224 ACGTGTATAGTGAGAGCATGGGATCGTGAGAGGCCGCTTTTATTCTGTCCTGCTATGAAT 165 Query 165305 ACACTTATGTGGGAACATCCTATTACTGAGCAGCATATAG--AAACTCTTAAGCATATGG 165362 || | ||||||||||||||| || || | | ||||||| | |||| |||| ||| | Sbjct 164 ACTCATATGTGGGAACATCCGATAACAGCCAAACATATAGACACACTCAAAAGC-TAT-G 107 Query 165363 GGTACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATATTGGAAAA 165418 | || | |||||| |||| |||||||||| | || ||||| |||| || ||| Sbjct 106 GTTATAGAGAAGTGAAGTGCATTGAGAAAACTTTGGCATGTGGAGATAAAGGTAAA 51 >seq171851 Length=421 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 || ||||| || | ||||| || || |||| || |||||||| || || |||||| | Sbjct 288 TTCATATCCCATGTACTTGCCTTCTTCGCAGCCAGCGATGGTATTGTAAATGAAAATTTG 347 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || |||| || |||| ||||| ||| |||||||||||| ||| || || ||||||||| Sbjct 348 GTGGAGAGATTTAGTCAGGAGGTTCAGGTTCCTGAAGCCAAATGCTTCTATGGATTCCAG 407 Query 268961 ATAGCTATAGA 268971 || || || || Sbjct 408 ATTGCGATGGA 418 >seq650275 Length=2042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| || || || ||||| || ||||| || || ||||| | || ||||| ||| Sbjct 1012 AGATGGAACGTTGACCATTTCTCGATGTTATACTCTGAGAGAGTGCGGCCATCTTCAAGT 1071 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 |||||||||||||| || || | ||| || || || | || || || || |||||| Sbjct 1072 TGTTTTCCAGCAAAGATAAGACGCTGGTGCTCTGGTAGAATGCCCTCCCAGTCTTGAATC 1131 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | ||||| ||||| || | ||| ||||| |||| Sbjct 1132 TGGGCTTTCACATTCTCGATGGTGTCGCTTGGTT 1165 >seq3113445 Length=152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || ||||| || ||||| || || || | || || |||||||| Sbjct 2 TCTTTCTGAATGTTGTAGTCTGAGAGAGTGTGGCCATCCTCCAACTGCTTGCCAGCAAAG 61 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 | || | ||| || || || || || || || | || |||||| | || || ||||| Sbjct 62 GTAAGACGCTGCTGGTCTGGTGGAATACCCTCCCTGTCTTGAATCATGGCCTTCACATTG 121 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTA 104516 || ||||| ||||| ||||| ||||||| Sbjct 122 TCGACGGTTTCGCTTGGTTCAACCTCTA 149 >seq559689 Length=1448 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||||| ||| || |||||||||||||| || ||| || ||| || | | Sbjct 88 ACAAGATGTAGTGTTGACTCTTTCTGAATATTGTAATCACCAAGGGTTTGGCCATATCTA 147 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| | |||||||| || || | || || || ||||| | ||||| || ||||| Sbjct 148 AGTTGCTGACCAGCAAAGATAAGACGTTGCTGTTCTGGAGGAACACCTTCCTTGTCCTGT 207 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| ||||| || | || | ||| || ||||| ||||| || ||| Sbjct 208 ATCTTAGCTTTGACGTCTTGAATGGTGTCAGATGGTTCAACCTCAAGAGTA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1092857145197656